Mir
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DB
2.1
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83 microRNA genes with seed AGUAGUC
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
▲
3' NTU
UG
UGUG
CNNC
Gmo-Mir-199-P3-v3
gmo-mir-199-2
MIR-199
AGUAGUC
MIMAT0044025
MIMAT0044190
GeneScaffold_2428
217011
217071
+
Gnathostomata
Vertebrata
No
Cli-Mir-199-P2-v3
cli-mir-199-2
MIR-199
AGUAGUC
MIMAT0038573
MIMAT0038574
scaffold835
50412
50472
+
Gnathostomata
Vertebrata
No
1
Sha-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
GL838915.1
7112
7172
-
Gnathostomata
Vertebrata
No
Tgu-Mir-199-P2-v3
tgu-mir-199-1
MIR-199
AGUAGUC
MIMAT0014645
MIMAT0014617
17
5878423
5878483
+
Gnathostomata
Vertebrata
No
1
Mdo-Mir-199-P3-v3
mdo-mir-199b-3
MIR-199
AGUAGUC
MIMAT0031066
MIMAT0026678
3
430288133
430288195
+
Gnathostomata
Vertebrata
No
1
Oan-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
NC_041731.1
32349237
32349297
+
Gnathostomata
Vertebrata
No
Dno-Mir-199-P2-v3
dno-mir-199-2
MIR-199
AGUAGUC
MIMAT0047739
MIMAT0047738
JH564958
197356
197416
+
Gnathostomata
Vertebrata
No
Aca-Mir-199-P2-v3
aca-mir-199b
MIR-199
AGUAGUC
MIMAT0021835
None
GL343763.1
95918
95978
+
Gnathostomata
Vertebrata
No
1
Cfa-Mir-199-P1-v3
cfa-mir-199-2
MIR-199
AGUAGUC
None
MIMAT0006642
chr7
26812765
26812825
+
Gnathostomata
Vertebrata
No
1
Mml-Mir-199-P3-v3
mml-mir-199a-2
MIR-199
AGUAGUC
MIMAT0006231
MIMAT0006232
chr19
10858567
10858629
-
Gnathostomata
Vertebrata
No
1
Pbv-Mir-199-P1-v3
pbv-mir-199-2
MIR-199
AGUAGUC
MIMAT0038996
MIMAT0038997
KE960262.1
14393
14453
+
Gnathostomata
Vertebrata
No
1
Bta-Mir-199-P3-v3
bta-mir-199a-2
MIR-199
AGUAGUC
MIMAT0003544
MIMAT0003746
NC_037334.1
15283415
15283477
-
Gnathostomata
Vertebrata
No
1
Cpi-Mir-199-P3-v3
cpi-mir-199-1
MIR-199
AGUAGUC
MIMAT0037818
MIMAT0037819
JH584417
604979
605041
+
Gnathostomata
Vertebrata
No
1
Ami-Mir-199-P2-v3
ami-mir-199-3
MIR-199
AGUAGUC
MIMAT0038216
MIMAT0038217
NW_017713629.1
13712829
13712889
+
Gnathostomata
Vertebrata
No
1
Tni-Mir-199-P2a-v3
tni-mir-199-2
MIR-199
AGUAGUC
MIMAT0002960
None
4
2900527
2900587
-
Clupeocephala
Vertebrata
No
Ocu-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
2005146567_corrected
71
131
-
Gnathostomata
Vertebrata
No
Rno-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
chr3
11348209
11348269
+
Gnathostomata
Vertebrata
No
Gja-Mir-199-P3-v3
None
MIR-199
AGUAGUC
None
None
NW_015168135.1
22565
22625
-
Gnathostomata
Vertebrata
No
1
Sto-Mir-199-P1-v3
None
MIR-199
AGUAGUC
None
None
BFAA01007060.1
135645
135705
+
Gnathostomata
Vertebrata
No
1
Ete-Mir-199-P3-v3
None
MIR-199
AGUAGUC
None
None
JH980426
1079700
1079760
+
Gnathostomata
Vertebrata
No
1
Cmi-Mir-199-P1-v3
None
MIR-199
AGUAGUC
None
None
KI635895.1
3660506
3660566
+
Gnathostomata
Vertebrata
No
1
Mal-Mir-199-P2a-v3
None
MIR-199
AGUAGUC
None
None
KV884737.1
2027135
2027195
+
Clupeocephala
Vertebrata
No
Mdo-Mir-199-P1-v3
mdo-mir-199b-2
MIR-199
AGUAGUC
MIMAT0031065
MIMAT0026678
2
64374174
64374234
-
Gnathostomata
Vertebrata
No
1
Dre-Mir-199-P2b-v3
None
MIR-199
AGUAGUC
None
None
chr5
63709623
63709683
-
Clupeocephala
Vertebrata
No
Gmo-Mir-199-P1b-v3
gmo-mir-199-4
MIR-199
AGUAGUC
MIMAT0044025
MIMAT0044026
contig309706
96
156
-
Clupeocephala
Vertebrata
No
1
Xtr-Mir-199-P1-v3
xtr-mir-199a
MIR-199
AGUAGUC
MIMAT0003618
MIMAT0003619
chr4
97341514
97341574
+
Gnathostomata
Vertebrata
No
1
Mml-Mir-199-P1-v3
mml-mir-199a-1
MIR-199
AGUAGUC
MIMAT0002531
None
chr1
195412013
195412073
+
Gnathostomata
Vertebrata
No
1
Mun-Mir-199-P3-v3
None
MIR-199
AGUAGUC
None
None
199-P3-v1_LR594634.1:197764192-197764453
101
162
+
Gnathostomata
Vertebrata
Unknown
1
Bta-Mir-199-P1-v3
bta-mir-199a-1
MIR-199
AGUAGUC
MIMAT0003544
MIMAT0003746
NC_037343.1
39625357
39625417
-
Gnathostomata
Vertebrata
No
1
Mmu-Mir-199-P3-v3
mmu-mir-199a-1
MIR-199
AGUAGUC
MIMAT0000229
MIMAT0000230
chr9
21496498
21496559
-
Gnathostomata
Vertebrata
No
1
Cpi-Mir-199-P1-v3
cpi-mir-199-2
MIR-199
AGUAGUC
MIMAT0037818
MIMAT0037819
JH585174
227135
227195
-
Gnathostomata
Vertebrata
No
1
Cpo-Mir-199-P3-v3
cpo-mir-199-1
MIR-199
AGUAGUC
MIMAT0047086
MIMAT0047087
scaffold_226
180917
180979
-
Gnathostomata
Vertebrata
No
1
Xla-Mir-199-P1c-v3
None
MIR-199
AGUAGUC
None
None
NC_030730.1
98473473
98473533
+
X. laevis
Vertebrata
No
1
Hsa-Mir-199-P2-v3
hsa-mir-199b
MIR-199
AGUAGUC
MIMAT0000263
MIMAT0004563
chr9
128244745
128244805
-
Gnathostomata
Vertebrata
No
Sha-Mir-199-P3-v3
sha-mir-199a
MIR-199
AGUAGUC
None
MIMAT0022785
GL841403.1
248965
249027
+
Gnathostomata
Vertebrata
No
1
Aca-Mir-199-P3-v3
aca-mir-199a-1
MIR-199
AGUAGUC
MIMAT0021834
None
2
80766239
80766301
-
Gnathostomata
Vertebrata
No
1
Cfa-Mir-199-P2-v3
cfa-mir-199-3
MIR-199
AGUAGUC
None
MIMAT0006642
chr9
55262353
55262413
+
Gnathostomata
Vertebrata
No
Pbv-Mir-199-P2-v3
pbv-mir-199-3
MIR-199
AGUAGUC
MIMAT0038998
MIMAT0038997
KE955379.1
131015
131075
+
Gnathostomata
Vertebrata
No
1
Gja-Mir-199-P1-v3
None
MIR-199
AGUAGUC
None
None
NW_015163693.1
22185
22245
-
Gnathostomata
Vertebrata
No
1
Mal-Mir-199-P1a-v3
None
MIR-199
AGUAGUC
None
None
KV884749.1
84487
84547
-
Clupeocephala
Vertebrata
No
1
Pma-Mir-199-o2-v3
pma-mir-199b
MIR-199
AGUAGUC
MIMAT0019507
MIMAT0019508
NC_046118.1
9684029
9684090
+
P. marinus
Vertebrata
No
Dre-Mir-199-P1a-v3
dre-mir-199-1
MIR-199
AGUAGUC
MIMAT0001277
MIMAT0003155
chr20
14875474
14875534
+
Clupeocephala
Vertebrata
No
1
Ami-Mir-199-P3-v3
ami-mir-199-1
MIR-199
AGUAGUC
MIMAT0038216
MIMAT0038217
NW_017709389.1
179937
179999
-
Gnathostomata
Vertebrata
No
1
Tni-Mir-199-P3-v3
tni-mir-199-3
MIR-199
AGUAGUC
MIMAT0002960
None
3
11403070
11403130
-
Gnathostomata
Vertebrata
No
1
Gga-Mir-199-P1-v3
gga-mir-199-2
MIR-199
AGUAGUC
MIMAT0001152
MIMAT0003721
8
5020651
5020711
+
Gnathostomata
Vertebrata
No
1
Ete-Mir-199-P1-v3
None
MIR-199
AGUAGUC
None
None
JH980318
26675833
26675893
+
Gnathostomata
Vertebrata
No
1
Ocu-Mir-199-P3-v3
ocu-mir-199a-1
MIR-199
AGUAGUC
MIMAT0048319
MIMAT0048320
chrUn0216
201980
202042
+
Gnathostomata
Vertebrata
No
1
Mmu-Mir-199-P1-v3
mmu-mir-199a-2
MIR-199
AGUAGUC
MIMAT0000229
MIMAT0000230
chr1
162217844
162217904
+
Gnathostomata
Vertebrata
No
1
Dno-Mir-199-P1-v3
dno-mir-199-1
MIR-199
AGUAGUC
MIMAT0047737
MIMAT0047738
JH566029
1167422
1167482
-
Gnathostomata
Vertebrata
No
1
Cpo-Mir-199-P1-v3
cpo-mir-199-2
MIR-199
AGUAGUC
MIMAT0047086
MIMAT0047087
scaffold_12
11462616
11462676
+
Gnathostomata
Vertebrata
No
1
Sto-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
BFAA01000443.1
504410
504470
-
Gnathostomata
Vertebrata
No
Cli-Mir-199-P1-v3
cli-mir-199-1
MIR-199
AGUAGUC
MIMAT0038573
MIMAT0038574
scaffold7
10450277
10450337
+
Gnathostomata
Vertebrata
No
1
Sha-Mir-199-P1-v3
None
MIR-199
AGUAGUC
None
None
GL856751.1
2995432
2995492
-
Gnathostomata
Vertebrata
No
1
Cmi-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
KI635931.1
2775494
2775554
+
Gnathostomata
Vertebrata
No
1
Tgu-Mir-199-P1-v3
tgu-mir-199-2
MIR-199
AGUAGUC
MIMAT0014645
MIMAT0014617
8
31114364
31114424
-
Gnathostomata
Vertebrata
No
1
Mal-Mir-199-P3-v3
None
MIR-199
AGUAGUC
None
None
KV884793.1
1445883
1445943
-
Gnathostomata
Vertebrata
No
Mdo-Mir-199-P2-v3
mdo-mir-199b-1
MIR-199
AGUAGUC
MIMAT0004125
MIMAT0026678
1
453998873
453998933
-
Gnathostomata
Vertebrata
No
Dre-Mir-199-P3-v3
dre-mir-199-3
MIR-199
AGUAGUC
MIMAT0001277
MIMAT0031922
chr3
47195159
47195219
-
Gnathostomata
Vertebrata
No
Oan-Mir-199-P1-v3
oan-mir-199
MIR-199
AGUAGUC
MIMAT0007172
MIMAT0007173
NC_041743.1
5356219
5356279
-
Gnathostomata
Vertebrata
No
1
Gmo-Mir-199-P2a-v3
gmo-mir-199-3
MIR-199
AGUAGUC
MIMAT0044025
MIMAT0044190
GeneScaffold_57
822222
822282
+
Clupeocephala
Vertebrata
No
Xla-Mir-199-P1d-v3
xla-mir-199
MIR-199
AGUAGUC
MIMAT0046510
MIMAT0046511
NC_030731.1
80439840
80439900
+
X. laevis
Vertebrata
No
1
Hsa-Mir-199-P3-v3
hsa-mir-199a-1
MIR-199
AGUAGUC
MIMAT0000231
MIMAT0000232
chr19
10817429
10817491
-
Gnathostomata
Vertebrata
No
1
Aca-Mir-199-P1-v3
aca-mir-199a-2
MIR-199
AGUAGUC
MIMAT0021834
None
AAWZ02037129
4079
4139
+
Gnathostomata
Vertebrata
No
1
Mml-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
chr15
10637142
10637202
+
Gnathostomata
Vertebrata
No
Bta-Mir-199-P2-v3
bta-mir-199b
MIR-199
AGUAGUC
MIMAT0003821
None
NC_037338.1
98855761
98855821
-
Gnathostomata
Vertebrata
No
Tni-Mir-199-P1b-v3
tni-mir-199-1
MIR-199
AGUAGUC
MIMAT0002960
None
15
2934183
2934243
+
Clupeocephala
Vertebrata
No
1
Cpi-Mir-199-P2-v3
cpi-mir-199-3
MIR-199
AGUAGUC
MIMAT0037818
MIMAT0037819
JH584612
7627614
7627674
-
Gnathostomata
Vertebrata
No
1
Ami-Mir-199-P1-v3
ami-mir-199-2
MIR-199
AGUAGUC
MIMAT0038216
MIMAT0038217
NW_017709598.1
581638
581698
-
Gnathostomata
Vertebrata
No
1
Ocu-Mir-199-P1-v3
ocu-mir-199a-2
MIR-199
AGUAGUC
MIMAT0048319
MIMAT0048320
chr13
20628416
20628476
+
Gnathostomata
Vertebrata
No
1
Cfa-Mir-199-P3-v3
cfa-mir-199-1
MIR-199
AGUAGUC
None
MIMAT0006642
chr20
50410923
50410985
+
Gnathostomata
Vertebrata
No
1
Pbv-Mir-199-P3-v3
pbv-mir-199-1
MIR-199
AGUAGUC
MIMAT0038996
MIMAT0038997
KE954297.1
75320
75382
-
Gnathostomata
Vertebrata
No
1
Rno-Mir-199-P1-v3
rno-mir-199a
MIR-199
AGUAGUC
MIMAT0000872
MIMAT0004738
chr13
80125517
80125577
+
Gnathostomata
Vertebrata
No
1
Gja-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
NW_015168135.1
22565
22625
-
Gnathostomata
Vertebrata
No
1
Ete-Mir-199-P2-v3
None
MIR-199
AGUAGUC
None
None
JH980366
6396369
6396428
+
Gnathostomata
Vertebrata
No
Mal-Mir-199-P1b-v3
None
MIR-199
AGUAGUC
None
None
KV884892.1
231069
231129
+
Clupeocephala
Vertebrata
No
1
Dre-Mir-199-P2a-v3
dre-mir-199-2
MIR-199
AGUAGUC
MIMAT0001277
MIMAT0003155
chr5
1376779
1376839
-
Clupeocephala
Vertebrata
No
Gmo-Mir-199-P1a-v3
gmo-mir-199-1
MIR-199
AGUAGUC
MIMAT0044025
MIMAT0044190
GeneScaffold_3026
81081
81141
+
Clupeocephala
Vertebrata
No
1
Gga-Mir-199-P2-v3
gga-mir-199-1
MIR-199
AGUAGUC
MIMAT0001152
MIMAT0003721
17
5405926
5405986
+
Gnathostomata
Vertebrata
No
1
Mun-Mir-199-P1-v3
None
MIR-199
AGUAGUC
None
None
199-P1-v1_LR594637.1:117477532-117477792
101
161
+
Gnathostomata
Vertebrata
No
1
Mmu-Mir-199-P2-v3
mmu-mir-199b
MIR-199
AGUAGUC
MIMAT0000672
MIMAT0004667
chr2
32318485
32318545
+
Gnathostomata
Vertebrata
No
Cpo-Mir-199-P2-v3
cpo-mir-199-3
MIR-199
AGUAGUC
MIMAT0047088
MIMAT0047087
scaffold_27
3923324
3923384
+
Gnathostomata
Vertebrata
No
Hsa-Mir-199-P1-v3
hsa-mir-199a-2
MIR-199
AGUAGUC
MIMAT0000231
MIMAT0000232
chr1
172144554
172144614
-
Gnathostomata
Vertebrata
No
1
Hsa-Mir-3924
hsa-mir-3924
MIR-3924
AGUAGUC
None
MIMAT0018199
chr10
57304489
57304547
-
H. sapiens
H. sapiens
No
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