MirGeneDB

Gene name

Gga-Mir-199-P2-v3

Family name MIR-199 (all species)
MiRBase ID gga-mir-199-2
Paralogues Gga-Mir-199-P2-v1  Gga-Mir-199-P2-v2  Gga-Mir-199-P3-v1  Gga-Mir-199-P3-v2  Gga-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P2-v1  Aca-Mir-199-P2-v2  Aca-Mir-199-P2-v3  Ami-Mir-199-P2-v1  Ami-Mir-199-P2-v2  Ami-Mir-199-P2-v3  Bta-Mir-199-P2-v1  Bta-Mir-199-P2-v2  Bta-Mir-199-P2-v3  Cfa-Mir-199-P2-v1  Cfa-Mir-199-P2-v2  Cfa-Mir-199-P2-v3  Cli-Mir-199-P2-v1  Cli-Mir-199-P2-v2  Cli-Mir-199-P2-v3  Cpi-Mir-199-P2-v1  Cpi-Mir-199-P2-v2  Cpi-Mir-199-P2-v3  Cpo-Mir-199-P2-v1  Cpo-Mir-199-P2-v2  Cpo-Mir-199-P2-v3  Dno-Mir-199-P2-v1  Dno-Mir-199-P2-v2  Dno-Mir-199-P2-v3  Dre-Mir-199-P2-v1  Dre-Mir-199-P2-v2  Dre-Mir-199-P2-v3  Ete-Mir-199-P2-v1  Ete-Mir-199-P2-v2  Ete-Mir-199-P2-v3  Hsa-Mir-199-P2-v1  Hsa-Mir-199-P2-v2  Hsa-Mir-199-P2-v3  Mdo-Mir-199-P2-v1  Mdo-Mir-199-P2-v2  Mdo-Mir-199-P2-v3  Mml-Mir-199-P2-v1  Mml-Mir-199-P2-v2  Mml-Mir-199-P2-v3  Mmu-Mir-199-P2-v1  Mmu-Mir-199-P2-v2  Mmu-Mir-199-P2-v3  Ocu-Mir-199-P2-v1  Ocu-Mir-199-P2-v2  Ocu-Mir-199-P2-v3  Rno-Mir-199-P2-v1  Rno-Mir-199-P2-v2  Rno-Mir-199-P2-v3  Sha-Mir-199-P2-v1  Sha-Mir-199-P2-v2  Sha-Mir-199-P2-v3  Tgu-Mir-199-P2-v1  Tgu-Mir-199-P2-v2  Tgu-Mir-199-P2-v3  Xtr-Mir-199-P2-v1  Xtr-Mir-199-P2-v2  Xtr-Mir-199-P2-v3 
Node of Origin (gene) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(galGal5)
8: 4652492-4652552 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-199-P2-v3)
Mir-199-P2-v1 8: 4652492-4652552 [+] UCSC Ensembl
Mir-199-P2-v2 8: 4652492-4652552 [+] UCSC Ensembl
Mir-214 8: 4658342-4658404 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAAGCGUCCGGAGAUCCUGCUCCGUCGCCCCAGUGUUCAGACUACCUGUUCAGGACAAUGCUGUUGUACAGUAGUCUGCACAUUGGUUAGACUGGGCAAGGGAAAGCAGCGACAUGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
UAGAAGCGUCCGGAGAU-  -|    C   GCC       U        C   UCAGGACA 
                  CC UGCUC GUC   CCAGUGU CAGACUAC UGU        A
                  GG ACGGG CAG   GGUUACA GUCUGAUG ACA        U
CAGGUACAGCGACGAAAG  A^    U   AUU       C        -   UGUUGUCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-199-P2-v3_5p*

MirBase accessionMIMAT0001152
Sequence
0- CCCAGUGUUCAGACUACCUGUU -22
Get sequence
Validated targets TargetScanVert: gga-miR-199-5p
miRDB: MIMAT0001152
Mature sequence

Gga-Mir-199-P2-v3_3p

MirBase accessionMIMAT0003721
Sequence
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence
Seed sequenceAGUAGUC
Validated targets TargetScanVert: gga-miR-199-3p
miRDB: MIMAT0003721