Mir-199-P2-v3

MirGeneDB ID

Hsa-Mir-199-P2-v3

Family name

MIR-199 (all species)

Seed

AGUAGUC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-199b

Paralogues

Hsa-Mir-199-P1-v1 Hsa-Mir-199-P1-v2 Hsa-Mir-199-P1-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P3-v1 Hsa-Mir-199-P3-v2 Hsa-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cli-Mir-199-P2-v1 Cli-Mir-199-P2-v2 Cli-Mir-199-P2-v3 Cmi-Mir-199-P2-v1 Cmi-Mir-199-P2-v2 Cmi-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dno-Mir-199-P2-v1 Dno-Mir-199-P2-v2 Dno-Mir-199-P2-v3 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2a-v2 Dre-Mir-199-P2a-v3 Dre-Mir-199-P2b-v1 Dre-Mir-199-P2b-v2 Dre-Mir-199-P2b-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Gga-Mir-199-P2-v1 Gga-Mir-199-P2-v2 Gga-Mir-199-P2-v3 Gja-Mir-199-P2-v1 Gja-Mir-199-P2-v2 Gja-Mir-199-P2-v3 Gmo-Mir-199-P2a-v1 Gmo-Mir-199-P2a-v2 Gmo-Mir-199-P2a-v3 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Loc-Mir-199-P2-v2 Mal-Mir-199-P2a-v1 Mal-Mir-199-P2a-v2 Mal-Mir-199-P2a-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v2 Mml-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Oan-Mir-199-P2-v1 Oan-Mir-199-P2-v2 Oan-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Pbv-Mir-199-P2-v1 Pbv-Mir-199-P2-v2 Pbv-Mir-199-P2-v3 Pma-Mir-199-o2-v1 Pma-Mir-199-o2-v2 Pma-Mir-199-o2-v3 Rno-Mir-199-P2-v1 Rno-Mir-199-P2-v2 Rno-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Sto-Mir-199-P2-v2 Sto-Mir-199-P2-v3 Tgu-Mir-199-P2-v1 Tgu-Mir-199-P2-v2 Tgu-Mir-199-P2-v3 Tni-Mir-199-P2a-v1 Tni-Mir-199-P2a-v2 Tni-Mir-199-P2a-v3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr9: 128244745-128244805 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v3)

Mir-199-P2-v1 chr9: 128244745-128244805 [-] UCSC Ensembl
Mir-199-P2-v2 chr9: 128244745-128244805 [-] UCSC Ensembl
Mir-199-P2-v3 chr9: 128244745-128244805 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCACCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    UCAGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU        C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA        C
CGCCACGGCUCCCAGAUU    CG  U^    U       C       -    UGUUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Star sequence

Hsa-Mir-199-P2-v3_5p*

mirBase accession

MIMAT0000263

Sequence

0- CCCAGUGUUUAGACUAUCUGUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000263
TargetScanVert: hsa-miR-199b-5p
TargetMiner: hsa-miR-199b-5p
miRDB: MIMAT0000263

Mature sequence

Hsa-Mir-199-P2-v3_3p

mirBase accession

MIMAT0004563

Sequence

40- CAGUAGUCUGCACAUUGGUUA -61

Get sequence

Proposed targets

microrna.org: MIMAT0004563
TargetScanVert: hsa-miR-199b-3p
TargetMiner: hsa-miR-199b-3p
miRDB: MIMAT0004563