| MirGeneDB ID | Xla-Mir-203-P7 |
|---|
| Family name |
MIR-203 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
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| Paralogues |
Xla-Mir-203-P8-v1
|
|---|
| Orthologues |
Lch-Mir-203
Spt-Mir-203
|
|---|
| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030738.1: 75310359-75310418 [+]
UCSC
Ensembl
|
|---|
| Variant | Xla-Mir-203-P7-v1 |
| Seed |
UGAAAUG |
|---|
Precursor
(pre-Mir +30nt flank) |
GUGCCUCACACAUUUCUGUCUCCCUGGCCAAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCGAAAUUGUGAAAUGUUUAGGACCACUUGAUCCGGGGGAUUCGCUCUGCCAGGCGUCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGCCUCACACAUUUCU--| U GC U G A UUCUCU
GUCUCCC G CAAGUGGUUCU AACA UUCA CAG \
UAGGGGG C GUUCACCAGGA UUGU AAGU GUU A
CACUGCGGACCGUCUCGCU^ C UA U A - AAAGCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
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| Star sequence |
Xla-Mir-203-P7-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGUUCUUAACAGUUCAACAG -23
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-203-P7-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- GUGAAAUGUUUAGGACCACUUG -60
Get sequence
|
|---|
| Variant | Xla-Mir-203-P7-v2 |
| Seed |
GAAAUGU |
|---|
Precursor
(pre-Mir +30nt flank) |
GGAUCUCGGAGGUUUCUGUCUCCCUGGCUGAGUGGUUCUUAACAGUUCAACAGUUCUCUAUCGAAAUUGUGAAAUGUUUAGGACCACUUGAUUUGGGGGACUCUCUCUUCUAAGGGUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAUCUCGGAGGUUUCU--| UG CU U G A GUUCUCU
GUCUCCC G GAGUGGUUCU AACA UUCA CA \
CAGGGGG U UUCACCAGGA UUGU AAGU GU A
ACGUGGGAAUCUUCUCUCU^ UU AG U A - UAAAGCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Mir-203-P7-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGUUCUUAACAGUUCAACA -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-203-P7-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAAAUGUUUAGGACCACUUG -60
Get sequence
|
|---|
