| MirGeneDB ID | Tur-Novel-4 |
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| Family name |
TUR-NOVEL-4 (all species) |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. urticae
|
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| Node of Origin (family) |
T. urticae
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587327.1: 533052-533118 [+]
Ensembl
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| Seed |
AGGAAAG |
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Precursor
(pre-Mir +30nt flank) |
CACAAUUAAGUUAUACCGUUAAAGAUUUUGAAGGAAAGAAUGGGACUAUUGACUUUGAUUAUAAUCAAAUUAAGUCAGUCUUCCCUCUUUCCUUAAAAAAUCAUAACUUUUUGUACACCAACUUAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CACAAUUAAGUUAUACC---| AA G- AU CU UUGAUUAU
GUUA GAUUUU AAGGAAAGA GGGA AUUGACU A
CAAU CUAAAA UUCCUUUCU CCCU UGACUGA A
UAAUUCAACCACAUGUUUUU^ A- AA -- UC AUUAAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Tur-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- AAGGAAAGAAUGGGACUAUUGACU -24
Get sequence
|
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| Star sequence |
Tur-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
44- UCAGUCUUCCCUCUUUCCUUAAA -67
Get sequence
|
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