| MirGeneDB ID | Tur-Novel-3 |
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| Family name |
TUR-NOVEL-3 (all species) |
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| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. urticae
|
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| Node of Origin (family) |
T. urticae
|
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587303.1: 2777364-2777427 [+]
Ensembl
|
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| Seed |
AUAAAAU |
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Precursor
(pre-Mir +30nt flank) |
GUACAUUUGUAAUUUAAAAGUACGAGAUGAUAUAAAAUGGACUCCGGAUUUUUGUGCAUUUCUACAGAUAUAAAUCCGGGGCUCAUUUUAAAUCAGCUUGUAUUAUUUGGCAUACUUCCUCUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUACAUUUGUAAUUUAAA--| A A GA UUGUGCAUU
AGUACGAG UGAU UAAAAUG CUCCGGAUUU U
UUAUGUUC ACUA AUUUUAC GGGGCCUAAA C
CAUCUCCUUCAUACGGUUUA^ G A UC UAUAGACAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Tur-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- UAUAAAAUGGACUCCGGAUUU -21
Get sequence
|
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| Star sequence |
Tur-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- AUCCGGGGCUCAUUUUAAAUC -64
Get sequence
|
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