| MirGeneDB ID | Tgu-Mir-1641 |
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| Family name |
MIR-1641 (all species) |
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| Seed |
GAGGAUU |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-1641
|
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| Paralogues |
|
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| Orthologues |
Ami-Mir-1641
Cli-Mir-1641
Gga-Mir-1641
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| Node of Origin (locus) |
Archosauria
|
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| Node of Origin (family) |
Archosauria
|
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Genome context
(TaeGut1_add) |
3: 90035665-90035723 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCAAUAACAACGUCGAUGCAGGGCAUUUCCUGAGGAUUAAUGACUGUCUGGGGUCAUCAUCUCCUCCCAGUUAGUUAUUAAUCUCCAGGAAAUACUCUGUGCCUUGAUCAUUAUUGCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAAUAACAACGUCGAU--| C AG U GUCAUC
GCAGGG AUUUCCUG GAUUAAUGACUG CUGGG \
UGUCUC UAAAGGAC CUAAUUAUUGAU GACCC A
UUCGUUAUUACUAGUUCCG^ A CU U UCCUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Tgu-Mir-1641_5p |
| mirBase accession | MIMAT0025400 |
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| Sequence |
0- UGAGGAUUAAUGACUGUCUGGG -22
Get sequence
|
|---|
| Star sequence |
Tgu-Mir-1641_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CAGUUAGUUAUUAAUCUCCAGG -59
Get sequence
|
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