MirGeneDB ID | Ami-Mir-1641 |
Family name |
MIR-1641 (all species) |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-1641
|
Paralogues |
|
Orthologues |
Cli-Mir-1641
Gga-Mir-1641
Tgu-Mir-1641
|
Node of Origin (locus) |
Archosauria
|
Node of Origin (family) |
Archosauria
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713592.1: 17046845-17046903 [-]
UCSC
|
Seed |
GGGGAUU |
Precursor (pre-Mir +30nt flank) |
GUAAUAACAACCUCAAUGCAGGGCAUUUCCUGGGGAUUAAUGACUGUCUGGGGUCAUCAUCUCCUCCCAGUUAGUUAUUAAUCCCCAGGAAAUACUUUAUACCUUGAUCAUUAUUGCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GUAAUAACAACCUCAAUGC--| C U GUCAUC
AGGG AUUUCCUGGGGAUUAAUGACUG CUGGG \
UUUC UAAAGGACCCCUAAUUAUUGAU GACCC A
UUCGUUAUUACUAGUUCCAUA^ A U UCCUCU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Ami-Mir-1641_5p (predicted) |
mirBase accession | MIMAT0038317 |
Sequence |
0- UGGGGAUUAAUGACUGUCUGGG -22
Get sequence
|
Star sequence |
Ami-Mir-1641_3p* (predicted) |
mirBase accession | None |
Sequence |
37- CAGUUAGUUAUUAAUCCCCAGG -59
Get sequence
|