MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-3862

Family name MIR-3862 (all species)
Seed GGGCAAA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-3862
Paralogues
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LG9: 14275678-14275733 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3862)		 Mir-3862 LG9: 14275678-14275733 [+] Ensembl
Mir-3863 LG9: 14275784-14275842 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUCUAAUUAGUGCAAGGUUGCUCGAAAUUGGGCAAAAGUCCGCCUGAACAUUUUUCUAAUUGUUCAGGCGCUCUUUUGCAUGACUUUGGCCAACCACAACCAGCAGUGCUAGUU
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Structure
        10          20        30        40        50       
CAGUCUAAUUAGUGCAA--|    CU    A  GG       UC          UUUU 
                   GGUUG  CGAA UU  GCAAAAG  CGCCUGAACA    U
                   CCAAC  GUUU AG  CGUUUUC  GCGGACUUGU    C
UUGAUCGUGACGACCAACA^    CG    C  UA       UC          UAAU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-3862_5p
mirBase accessionMIMAT0018800
Sequence 
0- UGGGCAAAAGUCCGCCUGAACA -22
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Star sequence

Tca-Mir-3862_3p*
mirBase accessionMIMAT0018801
Sequence 
34- UUCAGGCGCUCUUUUGCAUGAC -56
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