MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-7-P20

Family name MIR-7 (all species)
Seed GGAAGAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-7a
Paralogues Sme-Mir-7-P21  Sme-Mir-7-P22  Sme-Mir-7-P23 
Orthologues Aae-Mir-7  Asu-Mir-7  Bfl-Mir-7  Bge-Mir-7  Bla-Mir-7  Cgi-Mir-7  Cin-Mir-7  Cte-Mir-7  Dan-Mir-7  Dma-Mir-7  Dme-Mir-7  Dmo-Mir-7  Dsi-Mir-7  Dya-Mir-7  Esc-Mir-7  Hme-Mir-7  Isc-Mir-7  Lan-Mir-7  Lgi-Mir-7  Lpo-Mir-7  Npo-Mir-7  Obi-Mir-7  Ovu-Mir-7  Pfl-Mir-7  Pmi-Mir-7  Sko-Mir-7  Spu-Mir-7  Tca-Mir-7  Xbo-Mir-7 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000009_dd_Smes_g4_9: 6662373-6662434 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGUAGAAUAAUAGAAACGUGCCAUAAUUUGGAAGACUAUUGAUUUAGUUGAAUUGGUUAAUUUACUUUCAACUGAUUCUAGUCAUCCUUAUGUGGCAUGAAUAAUCCUCUUGGAAAAUUU
Get precursor sequence
Structure
        10           20        30        40        50        60 
AAAGUAGAAUAAUAGAAA---|        AUUU   A     UU  U        AUUGGUU 
                     CGUGCCAUA    GGA GACUA  GA UUAGUUGA       A
                     GUACGGUGU    CCU CUGAU  CU AGUCAACU       A
UUUAAAAGGUUCUCCUAAUAA^        AUU-   A     --  U        UUCAUUU 
120       110       100        90           80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-7-P20_5p
mirBase accessionMIMAT0003969
Sequence 
0- UGGAAGACUAUUGAUUUAGUUGA -23
Get sequence
Star sequence

Sme-Mir-7-P20_3p*
mirBase accessionMIMAT0012096
Sequence 
41- AACUGAUUCUAGUCAUCCUUA -62
Get sequence