MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-1546-as

Family name MIR-1546 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-1546 
Orthologues Mdo-Mir-1546  Mdo-Mir-1546-as  Neu-Mir-1546  Neu-Mir-1546-as 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL842385.1: 61315-61373 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1546-as)		 Mir-1546 GL842385.1: 61312-61372 [-] UCSC Ensembl
Mir-1546-as GL842385.1: 61315-61373 [+] UCSC Ensembl
Seed AGGGAUU
Precursor
(pre-Mir +30nt flank)		 
GGCACUCGGAGCUGCAGCCUUGGAAGAAAAUAGGGAUUCUGAGAGGUGGAAGGUAUUUUGUCUCACUUCCAUCCCUGAGAAUCCCUGAUUCCCGCCAAGGCAUCUUCCUUCUGUUCCAG
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Structure
        10          20         30        40        50         
GGCACUCGGAGCUGCAG--      AA-|  AA          G  A        GUAUUU 
                   CCUUGG   GAA  UAGGGAUUCU AG GGUGGAAG      \
                   GGAACC   CUU  GUCCCUAAGA UC CUACCUUC      U
GACCUUGUCUUCCUUCUAC      GCC^  A-          G  C        ACUCUG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-1546-as_5p
mirBase accessionNone
Sequence 
0- UAGGGAUUCUGAGAGGUGGAAG -22
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Star sequence

Sha-Mir-1546-as_3p*
mirBase accessionNone
Sequence 
37- UCCAUCCCUGAGAAUCCCUGAU -59
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