MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-1546

Family name MIR-1546 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-1546
Paralogues Sha-Mir-1546-as 
Orthologues Mdo-Mir-1546  Mdo-Mir-1546-as  Neu-Mir-1546  Neu-Mir-1546-as 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)		 GL842385.1: 61312-61372 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1546)		 Mir-1546 GL842385.1: 61312-61372 [-] UCSC Ensembl
Mir-1546-as GL842385.1: 61315-61373 [+] UCSC Ensembl
Seed CAGGGAU
Precursor
(pre-Mir +30nt flank)		 
UGGAACAGAAGGAAGAUGCCUUGGCGGGAAUCAGGGAUUCUCAGGGAUGGAAGUGAGACAAAAUACCUUCCACCUCUCAGAAUCCCUAUUUUCUUCCAAGGCUGCAGCUCCGAGUGCCGGC
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Structure
        10          20        30        40        50          
UGGAACAGAAGGAAGAU--|      C     UC         C    A      UGAGAC 
                   GCCUUGG GGGAA  AGGGAUUCU AGGG UGGAAG      \
                   CGGAACC UCUUU  UCCCUAAGA UCUC ACCUUC      A
CGGCCGUGAGCCUCGACGU^      U     UA         C    C      CAUAAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-1546_5p
mirBase accessionMIMAT0022795
Sequence 
0- UCAGGGAUUCUCAGGGAUGGAAG -23
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Star sequence

Sha-Mir-1546_3p*
mirBase accessionNone
Sequence 
37- UUCCACCUCUCAGAAUCCCUAUUU -61
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