MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-505

Family name MIR-505 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-505
Paralogues Rno-Mir-505-v1 
Orthologues Cja-Mir-505 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 143517017-143517075 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v2)		 Mir-505-v1 chrX: 143517017-143517075 [-] UCSC Ensembl
Mir-505-v2 chrX: 143517017-143517075 [-] UCSC Ensembl
Variant

Rno-Mir-505-v2
Seed UCAACAC
Precursor
(pre-Mir +30nt flank)		 
CCUCCAGUAGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGGUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGUAUCACCAAGUUCGUGGAUUCUA
Get precursor sequence
Structure
        10           20        30        40        50         
CCUCCAGUAGUAAAUUG---|   AC    U           G    A       UUCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UAUG  GGUC CUCCUUUGGUC UUCA AACUGCG      C
AUCUUAGGUGCUUGAACCAC^   A-    U           G    C       AUUGGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-505-v2_5p*
mirBase accessionMIMAT0017226
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-505-5p
miRDB: MIMAT0017226
Mature sequence

Rno-Mir-505-v2_3p
mirBase accessionMIMAT0003380
Sequence 
37- GUCAACACUUGCUGGUUUCCUC -59
Get sequence
Proposed targets microrna.org: MIMAT0003380
TargetScanVert: rno-miR-505-3p
miRDB: MIMAT0003380
Variant

Rno-Mir-505-v1
Seed GUCAACA
Precursor
(pre-Mir +30nt flank)		 
CCUCCAGUAGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGGUUAGCGUCAACACUUGCUGGUUUCCUCUCUGGAGUAUCACCAAGUUCGUGGAUUCUA
Get precursor sequence
Structure
        10           20        30        40        50         
CCUCCAGUAGUAAAUUG---|   AC    U           G    A        UCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGUU     \
                    UAUG  GGUC CUCCUUUGGUC UUCA AACUGCGA     C
AUCUUAGGUGCUUGAACCAC^   A-    U           G    C        UUGGA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-505-v1_5p*
mirBase accessionMIMAT0017226
Sequence 
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-505-5p
miRDB: MIMAT0017226
Mature sequence

Rno-Mir-505-v1_3p
mirBase accessionMIMAT0003380
Sequence 
36- CGUCAACACUUGCUGGUUUCCUC -59
Get sequence
Proposed targets microrna.org: MIMAT0003380
TargetScanVert: rno-miR-505-3p
miRDB: MIMAT0003380