MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-1249

Family name MIR-1249 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1249
Paralogues
Orthologues Bta-Mir-1249  Cfa-Mir-1249  Cja-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Eca-Mir-1249  Ete-Mir-1249  Hsa-Mir-1249  Laf-Mir-1249  Mml-Mir-1249  Mmr-Mir-1249  Mmu-Mir-1249  Ocu-Mir-1249  Pab-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr7: 125861222-125861280 [-] UCSC Ensembl
Seed CGCCCUU
Precursor
(pre-Mir +30nt flank)		 
CUUGCUGCUCCGAUUCUUGUUUGCAUGGGGAGGAGGGAGGGGAUGGGCCAAGUUCCCUAUGCCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGAC
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Structure
        10          20         30        40        50        60
CUUGCUGCUCCGAUUCUU--      AU  -|        A     U    CAA    CCUA 
                    GUUUGC  GG GGAGGAGGG GGGGA GGGC   GUUC    U
                    CAAGCG  CC CUUCUUCCC CCCCU CCCG   CAAG    G
CAGAACUUCCUGCUCAUCCU      GU  A^        -     U    ---    GUCC 
       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Rno-Mir-1249_5p*
mirBase accessionNone
Sequence 
0- AGGAGGGAGGGGAUGGGCCAAGUUC -25
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Mature sequence

Rno-Mir-1249_3p
mirBase accessionMIMAT0017892
Sequence 
37- ACGCCCUUCCCCCCCUUCUUCA -59
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Proposed targets TargetScanVert: rno-miR-1249
miRDB: MIMAT0017892