Mir-30-P1o3b

MirGeneDB ID

Pma-Mir-30-P1o3b

Family name

MIR-30 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-30a

Paralogues

Pma-Mir-30-P1o2 Pma-Mir-30-P1o3a Pma-Mir-30-P1o4 Pma-Mir-30-P1o5 Pma-Mir-30-P2o3 Pma-Mir-30-P2o4 Pma-Mir-30-P2o5

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046095.1: 8724552-8724613 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1o3b)

Mir-30-P1o3a NC_046095.1: 8723764-8723824 [+] UCSC Ensembl
Mir-30-P1o3b NC_046095.1: 8724552-8724613 [+] UCSC Ensembl
Mir-30-P2o3 NC_046095.1: 8724827-8724889 [+] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CGUUGGACAAGAACUGGCAGUGUGCACAUCUGUAAACAUCCUCGACUGGAAGCCCGUGCUUUGACAAGUGCUUUUAGUCGGAUGUUUGCGUCUGUCUCCUGCUCCUGUGCUUCACUCAACGU

Get precursor sequence

Structure

        10            20        30        40        50        60 
CGUUGGACAAGAACUGG----|  UGUGC   UC           UC          CCGUGCU 
                     CAG     ACA  UGUAAACAUCC  GACUGGAAGC       U
                     GUC     UGU  GCGUUUGUAGG  CUGAUUUUCG       U
UGCAACUCACUUCGUGUCCUC^  CUC--   CU           --          UGAACAG 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-30-P1o3b_5p

mirBase accession

MIMAT0019422

Sequence

0- UGUAAACAUCCUCGACUGGAAGCC -24

Get sequence

Star sequence

Pma-Mir-30-P1o3b_3p*

mirBase accession

MIMAT0019423

Sequence

40- CUUUUAGUCGGAUGUUUGCGUC -62

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