MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-208-P3a2-v1

Family name MIR-208 (all species)
Seed UAAGACG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-208
Paralogues Pma-Mir-208-P3a1-v1  Pma-Mir-208-P3a1-v2  Pma-Mir-208-P3a2-v2  Pma-Mir-208-P3a3-v1  Pma-Mir-208-P3a3-v2  Pma-Mir-208-P3b 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P3a2-v1)
Mir-208-P3a1-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a1-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a2-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a2-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a3-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a3-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGACUCCCGCUGGGAAGUGGCGCACGGGCGUGCUCCUCGCUCGUUUUAUUUUGGAAUCAAAAGUUAAAGAUAAGACGAGCAAGUAGUGGGUCCGAGCGCCGCGCGCACACAAGCUCCUCCG
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Structure
        10          20        30        40        50        60
ACGACUCCCGCUGGGAA--|      A     G    C  C             UGGAAUC 
                   GUGGCGC CGGGC UGCU CU GCUCGUUUUAUUU       A
                   CGCCGCG GCCUG GUGA GA CGAGCAGAAUAGA       A
GCCUCCUCGAACACACGCG^      A     G    U  A             AAUUGAA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-208-P3a2-v1_5p*

mirBase accessionMIMAT0019520
Sequence
0- GUGCUCCUCGCUCGUUUUAUUU -22
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Mature sequence

Pma-Mir-208-P3a2-v1_3p

mirBase accessionMIMAT0019521
Sequence
40- AUAAGACGAGCAAGUAGUGGGU -62
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