MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-208-P3a1

Family name MIR-208 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-208
Paralogues Pma-Mir-208-P3a2-v1  Pma-Mir-208-P3a3-v1  Pma-Mir-208-P3b 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P3a1-v1)		 Mir-208-P3a1-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a1-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a2-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a2-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a3-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a3-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Variant

Pma-Mir-208-P3a1-v1
Seed UAAGACG
Precursor
(pre-Mir +30nt flank)		 
ACGACUCCCGCUGGGAAGUGGCGCACGGGCGUGCUCCUCGCUCGUUUUAUUUUGGAAUCAAAAGUUAAAGAUAAGACGAGCAAGUAGUGGGUCCGAGCGCCGCGCGCACACAAGCUCCUCCG
Get precursor sequence
Structure
        10          20        30        40        50        60
ACGACUCCCGCUGGGAA--|      A     G    C  C             UGGAAUC 
                   GUGGCGC CGGGC UGCU CU GCUCGUUUUAUUU       A
                   CGCCGCG GCCUG GUGA GA CGAGCAGAAUAGA       A
GCCUCCUCGAACACACGCG^      A     G    U  A             AAUUGAA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-208-P3a1-v1_5p*
mirBase accessionMIMAT0019520
Sequence 
0- GUGCUCCUCGCUCGUUUUAUUU -22
Get sequence
Mature sequence

Pma-Mir-208-P3a1-v1_3p
mirBase accessionMIMAT0019521
Sequence 
40- AUAAGACGAGCAAGUAGUGGGU -62
Get sequence
Variant

Pma-Mir-208-P3a1-v2
Seed AAGACGA
Precursor
(pre-Mir +30nt flank)		 
ACGACUCCCGCUGGGAAGUGGCGCACGGGCGUGCUCCUCGCUCGUUUUAUUUUGGAAUCAAAAGUUAAAGAUAAGACGAGCAAGUAGUGGGUCCGAGCGCCGCGCGCACACAAGCUCCUCCG
Get precursor sequence
Structure
        10          20        30        40        50        60
ACGACUCCCGCUGGGAA--|      A     G    C  C            UUGGAAUC 
                   GUGGCGC CGGGC UGCU CU GCUCGUUUUAUU        A
                   CGCCGCG GCCUG GUGA GA CGAGCAGAAUAG        A
GCCUCCUCGAACACACGCG^      A     G    U  A            AAAUUGAA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-208-P3a1-v2_5p*
mirBase accessionMIMAT0019520
Sequence 
0- GUGCUCCUCGCUCGUUUUAUU -21
Get sequence
Mature sequence

Pma-Mir-208-P3a1-v2_3p
mirBase accessionMIMAT0019521
Sequence 
41- UAAGACGAGCAAGUAGUGGGU -62
Get sequence