| MirGeneDB ID | Pfl-Mir-2011 |
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| Family name |
MIR-2011 (all species) |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Pmi-Mir-2011
Sko-Mir-2011
Spu-Mir-2011
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
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Genome context
(Pfl) |
LD346233.1: 326914-326976 [+]
|
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| Seed |
CAAGGUG |
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Precursor
(pre-Mir +30nt flank) |
GCGCUUCUCUCAAUUGUGUCUAUUUCAGUGGGGUCACUGUCACACCUUAAGGUGCAAAAUUAUCCUGAACACCAAGGUGUGUUAGUGAUGACACUGCAGUAGAAACAGUCAACAUACUGCUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCGCUUCUCUCAAUUGUG--| U GG U AA CAAAAUU
UCUAUU CAGUG GUCACUG CACACCUU GGUG \
AGAUGA GUCAC UAGUGAU GUGUGGAA CCAC A
CCUCGUCAUACAACUGACAA^ C AG U -- AAGUCCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Pfl-Mir-2011_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGGUCACUGUCACACCUUAAGGUG -24
Get sequence
|
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| Mature sequence |
Pfl-Mir-2011_3p |
| mirBase accession | None |
|---|
| Sequence |
41- CCAAGGUGUGUUAGUGAUGACA -63
Get sequence
|
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