MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1998

Family name MIR-1998 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Cte-Mir-1998-v1  Dgr-Mir-1998  Efe-Mir-1998-P1  Efe-Mir-1998-P2  Snu-Mir-1998 
Node of Origin (locus) Sipuncula + Pleistoannelida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000002.1: 43820343-43820398 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1998)		 Mir-1998 JAPTHN010000002.1: 43820343-43820398 [+] Ensembl
Mir-2000-v2 JAPTHN010000002.1: 43826990-43827053 [+] Ensembl
Mir-2000-v1 JAPTHN010000002.1: 43826993-43827050 [+] Ensembl
Seed UGAACGC
Precursor
(pre-Mir +30nt flank)		 
GACGUAAGAAGUGACCACUUGUCCCAAAUGAUGUAUAUCCCUACGUCCACACUUCCCUCUCCAGUUGAACGCAGAGAUGUACAUCAUCCAUUGGACGAACAGCCUCACGUGACUGG
Get precursor sequence
Structure
        10        20          30        40        50        
GACGUAAGAAGUGACCAC      CAA--|           C  A   C  C   UCCC 
                  UUGUCC     AUGAUGUAUAUC CU CGU CA ACU    \
                  AGCAGG     UACUACAUGUAG GA GCA GU UGA    U
GGUCAGUGCACUCCGACA      UUACC^           A  C   A  -   CCUC 
    110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-1998_5p*
mirBase accessionNone
Sequence 
0- AUGUAUAUCCCUACGUCCACACU -23
Get sequence
Mature sequence

Pdu-Mir-1998_3p
mirBase accessionNone
Sequence 
34- UUGAACGCAGAGAUGUACAUCA -56
Get sequence