| MirGeneDB ID | Pdu-Mir-1995 |
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| Family name |
MIR-1995 (all species) |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1995
Efe-Mir-1995-P1
Efe-Mir-1995-P2
Ofu-Mir-1995
Snu-Mir-1995
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| Node of Origin (locus) |
Annelida
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| Node of Origin (family) |
Annelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000005.1: 31347921-31347977 [-]
Ensembl
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| Seed |
UACAUCU |
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Precursor
(pre-Mir +30nt flank) |
UAGUUCCAGAAAAGACCGCUAGGGUUCCCUGUACAUCUCACAUUGUGACCAUGUGACUUAACAAUGGUCUCUGUGUGAAAUGUCGAUAGAUCCCUUGGCUAUCCAACAAUCACAACG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAGUUCCAGAAAAGACC- UUCC --| C UGU GUGAC
GCUAGGG CUGU ACAU UCACAU GACCAU \
CGGUUCC GAUA UGUA AGUGUG CUGGUA U
GCAACACUAACAACCUAU CUA- GC^ A UCU ACAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Mature sequence |
Pdu-Mir-1995_5p |
| mirBase accession | None |
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| Sequence |
0- GUACAUCUCACAUUGUGACCAU -22
Get sequence
|
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| Star sequence |
Pdu-Mir-1995_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- GGUCUCUGUGUGAAAUGUCGAU -57
Get sequence
|
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