| MirGeneDB ID | Cte-Mir-1995 |
|---|
| Family name |
MIR-1995 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-1995
|
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| Paralogues |
|
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| Orthologues |
Efe-Mir-1995-P1
Efe-Mir-1995-P2
Ofu-Mir-1995
Pdu-Mir-1995
Snu-Mir-1995
|
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| Node of Origin (locus) |
Annelida
|
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| Node of Origin (family) |
Annelida
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_394: 114750-114808 [+]
Ensembl
|
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| Seed |
UACAUCU |
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Precursor
(pre-Mir +30nt flank) |
ACAGGUCAUCGAAGCAGGGCGAAGUUUUCUGUACAUCUCGCAUUGUGACCAUCUGUUGUUAACGCAUGGUUUCAAUGGGAUAUGUUGAUAAAGCUUCCGUCGAGGUCAACAUCCGAGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAGGUCAUCGAAGCAG- -| CUGU C G U CUGUUG
GGC GAAGUUUU ACAU UC CAUUG GACCAU \
CUG CUUCGAAA UGUA AG GUAAC UUGGUA U
CGGAGCCUACAACUGGAG C^ UAGU U G U CGCAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Cte-Mir-1995_5p |
| mirBase accession | MIMAT0009706 |
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| Sequence |
0- GUACAUCUCGCAUUGUGACCAU -22
Get sequence
|
|---|
| Star sequence |
Cte-Mir-1995_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- GGUUUCAAUGGGAUAUGUUGAU -59
Get sequence
|
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