| MirGeneDB ID | Pab-Mir-552 |
|---|
| Family name |
MIR-552 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cja-Mir-552
Hsa-Mir-552
Mml-Mir-552
|
|---|
| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 198883175-198883233 [+]
UCSC
Ensembl
|
|---|
| Seed |
GUUUAAC |
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Precursor
(pre-Mir +30nt flank) |
UUUGUUCAACCAUUCAAAUAUACCACAGUUUGUUUAACCUUUCGCGUGUUGGUUGAAGAUGCCUUUCAACAGGUGACUGGUUAGACAAACUGUGGUAUAUACACAGGAUGGAAUACUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUGUUCAACCAUUCAA--| UU G UUGAAG
AUAUACCACAGUUUGUUUAACC UCGC UGUUGG \
UAUAUGGUGUCAAACAGAUUGG AGUG ACAACU A
CAUCAUAAGGUAGGACACA^ UC G UUCCGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-552_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGUUUAACCUUUCGCGUGUUGG -22
Get sequence
|
|---|
| Co-mature sequence |
Pab-Mir-552_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- AACAGGUGACUGGUUAGACAAA -59
Get sequence
|
|---|
