| MirGeneDB ID | Pab-Mir-1307 |
|---|
| Family name |
MIR-1307 (all species) |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-1307
Cfa-Mir-1307
Cja-Mir-1307
Dno-Mir-1307
Eca-Mir-1307
Hsa-Mir-1307
Laf-Mir-1307-v1
Mml-Mir-1307
Mmr-Mir-1307-v1
Ocu-Mir-1307
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054687.2: 110370425-110370486 [-]
UCSC
Ensembl
|
|---|
| Seed |
CUCGGCG |
|---|
Precursor
(pre-Mir +30nt flank) |
CAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUGCAUACGAAUUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGCUGAGUCACUGUCA-- CCA U A-| U A GC UCUGUG
CUGCCUA AUC CGACCGG CC CG CCG UCG U
GGCGGAU UGG GCUGGCU GG GC GGC AGC U
ACUUUUAAGCAUACGUACU AGA U GC^ U - UC UAACCG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on the 3p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pab-Mir-1307_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCGACCGGACCUCGACCGGCUCG -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-1307_3p |
| mirBase accession | None |
|---|
| Sequence |
39- ACUCGGCGUGGCGUCGGUCGUGG -62
Get sequence
|
|---|
