| MirGeneDB ID | Bta-Mir-1307 |
|---|
| Family name |
MIR-1307 (all species) |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-1307
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cfa-Mir-1307
Cja-Mir-1307
Dno-Mir-1307
Eca-Mir-1307
Hsa-Mir-1307
Laf-Mir-1307-v1
Mml-Mir-1307
Mmr-Mir-1307-v1
Ocu-Mir-1307
Pab-Mir-1307
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037353.1: 23985877-23985938 [-]
UCSC
Ensembl
|
|---|
| Seed |
CGACCGG |
|---|
Precursor
(pre-Mir +30nt flank) |
CGGCUGAGUCACUGCCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUAUAUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUACAGACGAGUUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGGCUGAGUCACUGCCA-- CCA U A-| U A GC UCUAUA
CUGCCUA AUC CGACCGG CC CG CCG UCG U
GGCGGAU UGG GCUGGCU GG GC GGC AGC U
ACUUUUGAGCAGACAUACU AGA U GC^ U - UC UAACCG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bta-Mir-1307_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCGACCGGACCUCGACCGGCUCG -23
Get sequence
|
|---|
| Star sequence |
Bta-Mir-1307_3p* |
| mirBase accession | MIMAT0009969 |
|---|
| Sequence |
39- ACUCGGCGUGGCGUCGGUCGUGG -62
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-1307
|
|---|
