| MirGeneDB ID | Ocu-Mir-872 |
|---|
| Family name |
MIR-872 (all species) |
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| Seed |
AGGUUAC |
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| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-872
|
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| Paralogues |
|
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| Orthologues |
Cpo-Mir-872
Mmu-Mir-872
Rno-Mir-872
|
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| Node of Origin (locus) |
Glires
|
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| Node of Origin (family) |
Glires
|
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Genome context
(oryCun2_add) |
chr1: 26551750-26551810 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGGGGUUUUUGUUAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCAUUAUUUCUUGCCUGAACUAUUGGAGUAGCCUCCUAACUGGUCUCCCCACCUCCAGUCUUGCCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGGGUUUUUGUUAGAA-- UU U A GU-| ACCUCAU
GG ACU GUUAG AGGUUACUU UAGUUCAGG U
CC UGG CAAUC UCCGAUGAG AUCAAGUCC A
CCCCGUUCUGACCUCCACC UC U C GUU^ GUUCUUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ocu-Mir-872_5p |
| mirBase accession | MIMAT0048571 |
|---|
| Sequence |
0- AAGGUUACUUGUUAGUUCAGG -21
Get sequence
|
|---|
| Star sequence |
Ocu-Mir-872_3p* |
| mirBase accession | MIMAT0048572 |
|---|
| Sequence |
39- UGAACUAUUGGAGUAGCCUCCU -61
Get sequence
|
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