| MirGeneDB ID | Eca-Mir-872 |
|---|
| Family name |
MIR-872 (all species) |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
eca-mir-872
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cpo-Mir-872
Mmr-Mir-872
Mmu-Mir-872
Ocu-Mir-872
Rno-Mir-872
|
|---|
| Node of Origin (locus) |
Boreoeutheria
|
|---|
| Node of Origin (family) |
Boreoeutheria
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009170.1: 44521289-44521348 [+]
UCSC
Ensembl
|
|---|
| Seed |
AGGUUAC |
|---|
Precursor
(pre-Mir +30nt flank) |
CAGGGGUUUUGUUAGAAGGUUACUUGUUAGAAGGUUACUUGUUAGUUCAGGACCUCGUUAUUUCUUGCCUGAACUUUGCAGUAGCCUCCUAACUGGUCUCCCCACCUCCAGUCUAGCCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGGGGUUUUGUUAGAA--| UU U A U U- ACCUCGU
GG ACU GUUAG AGGUUACU GU AGUUCAGG U
CC UGG CAAUC UCCGAUGA CG UCAAGUCC A
CCCCGAUCUGACCUCCACC^ UC U C - UU GUUCUUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Eca-Mir-872_5p |
| mirBase accession | MIMAT0013119 |
|---|
| Sequence |
0- AAGGUUACUUGUUAGUUCAGG -21
Get sequence
|
|---|
| Star sequence |
Eca-Mir-872_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UGAACUUUGCAGUAGCCUCCU -60
Get sequence
|
|---|
