MirGeneDB ID | Ocu-Mir-676 |
Family name |
MIR-676 (all species) |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-676
|
Paralogues |
|
Orthologues |
Cfa-Mir-676
Cja-Mir-676
Cpo-Mir-676
Dno-Mir-676
Eca-Mir-676
Hsa-Mir-676
Laf-Mir-676
Mml-Mir-676
Mmr-Mir-676
Mmu-Mir-676
Pab-Mir-676
Rno-Mir-676
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chrX: 48575161-48575217 [+]
UCSC
Ensembl
|
Seed |
CGUCCUA |
Precursor (pre-Mir +30nt flank) |
UGCAUCUCCGAGCCUCACCUGAAUGUGUGACUCUUCAACCUCAGGACUUGCAGAACUAAGAGAGUGCCGUCCUAAGGUUGUUGAGUUGUGCAUUUCAGGGCAUGUCAUCUCUAUGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCAUCUCCGAGCCUCA- -| UG UU C UU GAACU
CCUG AAUGUG ACUC CAACCU AGGAC GCA A
GGAC UUACGU UGAG GUUGGA UCCUG CGU A
AGGUAUCUCUACUGUACG U^ GU UU A C- GAGAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Ocu-Mir-676_5p* |
mirBase accession | MIMAT0048559 |
Sequence |
0- CUCUUCAACCUCAGGACUUGCA -22
Get sequence
|
Mature sequence |
Ocu-Mir-676_3p |
mirBase accession | MIMAT0048560 |
Sequence |
36- CCGUCCUAAGGUUGUUGAGUU -57
Get sequence
|