| MirGeneDB ID | Cpo-Mir-676 |
|---|
| Family name |
MIR-676 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-676
|
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| Paralogues |
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| Orthologues |
Cfa-Mir-676
Cja-Mir-676
Dno-Mir-676
Eca-Mir-676
Hsa-Mir-676
Laf-Mir-676
Mml-Mir-676
Mmr-Mir-676
Mmu-Mir-676
Ocu-Mir-676
Pab-Mir-676
Rno-Mir-676
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_26: 27706144-27706198 [-]
UCSC
|
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| Seed |
CGUCCUU |
|---|
Precursor
(pre-Mir +30nt flank) |
UCAUAUCAGAUCUCCACCUCAGUGCAUAACUCUUCAACCUGAGGACUCGCAGGGUAAAUGGAAUGCCGUCCUUUGGUUGUUGAGUUGUGCAUUUUUGGGUGUUUCAUCUCUACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAUAUCAGAUCUCCACCUC--| UU U UC GGGUA
AGUGCAUAACUC CAACC GAGGAC GCA A
UUACGUGUUGAG GUUGG UUCCUG CGU A
GACAUCUCUACUUUGUGGGUUU^ UU U C- AAGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The Drosha cut is +1 relative to the other mammals (excluding human which is a Group 1). |
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| 3' NTU |
Yes
|
|---|
| Motifs | No |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-676_5p* |
| mirBase accession | MIMAT0047375 |
|---|
| Sequence |
0- UCUUCAACCUGAGGACUCGCA -21
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-676_3p |
| mirBase accession | MIMAT0047376 |
|---|
| Sequence |
35- CCGUCCUUUGGUUGUUGAGU -55
Get sequence
|
|---|
