MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-615

Family name MIR-615 (all species)
Seed CCGAGCC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-615  Cfa-Mir-615  Cpo-Mir-615  Ete-Mir-615  Hsa-Mir-615  Mml-Mir-615  Mmu-Mir-615  Rno-Mir-615 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
1992045267: 125-188 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUCCCAGCGACUCGGGAGGGGCGGGAGGGGGGUCCCCGGUGCCCGGACCUGGAGGGUGCUUGCUGUUCGGUCCGAGCCUGGGUCUCCCUCUUCCCCCCACCCCCCCUCAGCCCCUCCGGCC
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Structure
        10           20        30        40        50        60  
AGGCUCCCAGCGACUCG---| A    C          UC     U  C      UGGAGGGUG 
                    GG GGGG GGGAGGGGGG  CCCGG GC CGGACC         \
                    CC CCCC CCUUCUCCCU  GGGUC CG GCCUGG         C
CCGGCCUCCCCGACUCCCCC^ A    -          CU     -  A      CUUGUCGUU 
  120       110       100         90         80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-615_5p*

mirBase accessionNone
Sequence
0- GGGGGUCCCCGGUGCCCGGACC -22
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Mature sequence

Ocu-Mir-615_3p

mirBase accessionNone
Sequence
43- UCCGAGCCUGGGUCUCCCUCU -64
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