MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-346

Family name MIR-346 (all species)
Seed GUCUGCC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-346
Paralogues
Orthologues Bta-Mir-346  Cfa-Mir-346  Cpo-Mir-346  Ete-Mir-346  Hsa-Mir-346  Mml-Mir-346  Ocu-Mir-346  Rno-Mir-346 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chr14: 34894624-34894683 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCGGUUAGGAGGUCUCUGUGUUGGGCGUCUGUCUGCCCGAGUGCCUGCCUCUCUGUUGCUCUGAAGGAGGCAGGGGCUGGGCCUGCAGCUGCCUGGGCAGAGCUGCUCCUUCGAGGGAC
Get precursor sequence
Structure
        10           20        30        40        50          
GGCGGUUAGGAGGUCUC---|  G UG    U    CU    G   G         CUGUUG 
                    UGU U  GGCG CUGU  GCCC AGU CCUGCCUCU      \
                    ACG G  CCGU GACG  CGGG UCG GGACGGAGG      C
CAGGGAGCUUCCUCGUCGAG^  - GU    C    UC    -   G         AAGUCU 
.       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-346_5p

mirBase accessionMIMAT0000597
Sequence
0- UGUCUGCCCGAGUGCCUGCCUCU -23
Get sequence
Proposed targets microrna.org: MIMAT0000597
TargetScanVert: mmu-miR-346-5p
miRDB: MIMAT0000597
Star sequence

Mmu-Mir-346_3p*

mirBase accessionMIMAT0017039
Sequence
38- AGGCAGGGGCUGGGCCUGCAGC -60
Get sequence
Proposed targets TargetScanVert: mmu-miR-346-3p
miRDB: MIMAT0017039