MirGeneDB ID | Laf-Mir-346 |
Family name |
MIR-346 (all species) |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-346
Cfa-Mir-346
Cja-Mir-346
Cpo-Mir-346
Eca-Mir-346
Ete-Mir-346
Hsa-Mir-346
Mml-Mir-346
Mmr-Mir-346
Mmu-Mir-346
Ocu-Mir-346
Pab-Mir-346
Rno-Mir-346
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010090.1: 10013947-10014004 [-]
UCSC
Ensembl
|
Seed |
GUCUGCC |
Precursor (pre-Mir +30nt flank) |
AAGUACGGGGAGGUCUCUGUGUUGGGUGCCUGUCUGCCCGCCUGCCUGCCUCUCUGUCCUCUGAAAGAGGCAGGGGCCGGGCUGCAGCUGCCUGGGCAGAGCUGCUCCUGCGUGCACA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGUACGGGGAGGUCUC---| G UG GC CU - UG CUGUC
UGU U GGU CUGU GCCCG CC CCUGCCUCU C
ACG G CCG GACG CGGGC GG GGACGGAGA U
ACACGUGCGUCCUCGUCGAG^ - GU UC U- C -- AAGUC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-346_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUCUGCCCGCCUGCCUGCCUCU -23
Get sequence
|
Star sequence |
Laf-Mir-346_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AGGCAGGGGCCGGGCUGCAGC -58
Get sequence
|