MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-330-v2

Family name MIR-330 (all species)
Seed CUCUGGG
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-330
Paralogues Mml-Mir-330-v1 
Orthologues Bta-Mir-330-v2  Cfa-Mir-330-v2  Cpo-Mir-330-v2  Dno-Mir-330-v2  Ete-Mir-330-v2  Hsa-Mir-330-v2  Mmu-Mir-330-v2  Ocu-Mir-330-v2  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rheMac8_trace)
chr19: 40984418-40984481 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v2)
Mir-330-v1 chr19: 40984418-40984481 [-] UCSC Ensembl
Mir-330-v2 chr19: 40984418-40984481 [-] UCSC Ensembl
Mir-642 chr19: 41017632-41017688 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCUGCCCCUUACUCGGCCCCGUUU
Get precursor sequence
Structure
        10         20         30          40         50        60 
CAUGCUGUGUGAUCUUU-   -  UCA           --    -|   U   AG    UGCAAG 
                  GGC GA   CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                  CCG CU   GACGGAGAGAC  CCGG ACAC GAA  CGAG      A
UUUGCCCCGGCUCAUUCC   U  CGC           GU    C^   -   A-    CCAACU 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-330-v2_5p

mirBase accessionMIMAT0006270
Sequence
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
Get sequence
Proposed targets TargetScanVert: mml-miR-330-5p
Co-mature sequence

Mml-Mir-330-v2_3p

mirBase accessionMIMAT0006271
Sequence
39- GCAAAGCACACGGCCUGCAGAGAGG -64
Get sequence
Proposed targets TargetScanVert: mml-miR-330-3p