MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7398-P17

Family name MIR-7398 (all species)
Seed GUGUAGA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7398w
Paralogues Mdo-Mir-7398-P1  Mdo-Mir-7398-P2  Mdo-Mir-7398-P3  Mdo-Mir-7398-P4  Mdo-Mir-7398-P5  Mdo-Mir-7398-P6  Mdo-Mir-7398-P7  Mdo-Mir-7398-P8  Mdo-Mir-7398-P9  Mdo-Mir-7398-P10a  Mdo-Mir-7398-P10b  Mdo-Mir-7398-P11  Mdo-Mir-7398-P12  Mdo-Mir-7398-P13  Mdo-Mir-7398-P14a  Mdo-Mir-7398-P14b  Mdo-Mir-7398-P15  Mdo-Mir-7398-P16  Mdo-Mir-7398-P18  Mdo-Mir-7398-P19  Mdo-Mir-7398-P20  Mdo-Mir-7398-P21  Mdo-Mir-7398-P22  Mdo-Mir-7398-P23  Mdo-Mir-7398-P24  Mdo-Mir-7398-P25  Mdo-Mir-7398-P26  Mdo-Mir-7398-P27  Mdo-Mir-7398-P28  Mdo-Mir-7398-P29 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
X: 57294562-57294624 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7398-P17)
Mir-7398-P1 X: 57276306-57276364 [+] UCSC Ensembl
Mir-7398-P2 X: 57279275-57279333 [+] UCSC Ensembl
Mir-7398-P3 X: 57282764-57282822 [+] UCSC Ensembl
Mir-7398-P4 X: 57283471-57283530 [+] UCSC Ensembl
Mir-7398-P5 X: 57284128-57284188 [+] UCSC Ensembl
Mir-7398-P6 X: 57284809-57284869 [+] UCSC Ensembl
Mir-7398-P7 X: 57285473-57285533 [+] UCSC Ensembl
Mir-7398-P8 X: 57286131-57286191 [+] UCSC Ensembl
Mir-7398-P9 X: 57286820-57286880 [+] UCSC Ensembl
Mir-7398-P10b X: 57286821-57286879 [+] UCSC Ensembl
Mir-7398-P10a X: 57287463-57287521 [+] UCSC Ensembl
Mir-7398-P11 X: 57288057-57288117 [+] UCSC Ensembl
Mir-7398-P12 X: 57288723-57288783 [+] UCSC Ensembl
Mir-7398-P13 X: 57289402-57289462 [+] UCSC Ensembl
Mir-7398-P14b X: 57291703-57291761 [+] UCSC Ensembl
Mir-7398-P15 X: 57292644-57292702 [+] UCSC Ensembl
Mir-7398-P14a X: 57293442-57293500 [+] UCSC Ensembl
Mir-7398-P16 X: 57293921-57293979 [+] UCSC Ensembl
Mir-7398-P17 X: 57294562-57294624 [+] UCSC Ensembl
Mir-7398-P18 X: 57296466-57296526 [+] UCSC Ensembl
Mir-7398-P19 X: 57297040-57297098 [+] UCSC Ensembl
Mir-7398-P20 X: 57297721-57297779 [+] UCSC Ensembl
Mir-7398-P21 X: 57298336-57298390 [+] UCSC Ensembl
Mir-7398-P22 X: 57301459-57301516 [+] UCSC Ensembl
Mir-7398-P23 X: 57306266-57306324 [+] UCSC Ensembl
Mir-7398-P24 X: 57307981-57308039 [+] UCSC Ensembl
Mir-7398-P25 X: 57311982-57312040 [+] UCSC Ensembl
Mir-7398-P26 X: 57314588-57314647 [+] UCSC Ensembl
Mir-7398-P27 X: 57315817-57315874 [+] UCSC Ensembl
Mir-7398-P28 X: 57318976-57319034 [+] UCSC Ensembl
Mir-7398-P29 X: 57321995-57322057 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCUGUUCUUUGAUGGCCAGGUGCCCAACUGUGUAGAGCCAAGAAAUACGUCGUGUUUUCUCUCUCUCGGUAAAUUUCUUGCCUCUCUCAUUUGAGCAUCUAGGACUGUGCAUCUGUCCCCU
Get precursor sequence
Structure
        10          20        30        40        50        60 
GUCCUGUUCUUUGAUGG-  -|     C   C  UGU    C        ACG   UGUUUU 
                  CC AGGUGC CAA UG   AGAG CAAGAAAU   UCG      C
                  GG UCUACG GUU AC   UCUC GUUCUUUA   GGC      U
UCCCCUGUCUACGUGUCA  A^     A   U  UC-    C        AAU   UCUCUC 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-7398-P17_5p

mirBase accessionMIMAT0050444
Sequence
0- UGUGUAGAGCCAAGAAAUACGUCG -24
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Star sequence

Mdo-Mir-7398-P17_3p*

mirBase accessionMIMAT0050445
Sequence
40- GUAAAUUUCUUGCCUCUCUCAUU -63
Get sequence