Mir-7385-P5c

MirGeneDB ID

Mdo-Mir-7385-P5c

Family name

MIR-7385 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7385g-3

Paralogues

Mdo-Mir-7385-P1a Mdo-Mir-7385-P1b Mdo-Mir-7385-P1c Mdo-Mir-7385-P2-v1 Mdo-Mir-7385-P3 Mdo-Mir-7385-P4 Mdo-Mir-7385-P5a Mdo-Mir-7385-P5b Mdo-Mir-7385-P6 Mdo-Mir-7385-P7 Mdo-Mir-7385-P8

Orthologues

Neu-Mir-7385-o5

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 4617777-4617835 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7385-P5c)

Mir-7385-P1a X: 4607962-4608023 [+] UCSC Ensembl
Mir-7385-P1b X: 4609054-4609115 [+] UCSC Ensembl
Mir-7385-P2-v1 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P2-v2 X: 4610588-4610649 [+] UCSC Ensembl
Mir-7385-P3 X: 4611475-4611536 [+] UCSC Ensembl
Mir-7385-P4 X: 4611934-4611995 [+] UCSC Ensembl
Mir-7385-P5a X: 4612215-4612273 [+] UCSC Ensembl
Mir-7385-P6 X: 4614575-4614633 [+] UCSC Ensembl
Mir-7385-P5b X: 4614848-4614909 [+] UCSC Ensembl
Mir-7385-P7 X: 4615421-4615479 [+] UCSC Ensembl
Mir-7385-P8 X: 4616510-4616572 [+] UCSC Ensembl
Mir-7385-P1c X: 4616788-4616846 [+] UCSC Ensembl
Mir-7385-P5c X: 4617777-4617835 [+] UCSC Ensembl

Seed

AGCACAG

Precursor
(pre-Mir +30nt flank)

AUGUCCUGCGUCAUCUCUAGGGUAUCUUCUUAGUCUGAUAUUCCAUGUUUCUAUGAUAUAAAACUUGGAGCACAGAAUGUCAGACCUAGAAGCUGCCUUGAACUGAUCUACACCUCCAA

Get precursor sequence

Structure

        10          20        30        40        50         
AUGUCCUGCGUCAUCUC--|      U     UA           CA      UAUGAUA 
                   UAGGGUA CUUCU  GUCUGAUAUUC  UGUUUC       \
                   GUUCCGU GAAGA  CAGACUGUAAG  ACGAGG       U
AACCUCCACAUCUAGUCAA^      C     UC           AC      UUCAAAA 
       110       100        90        80        70        60