Mir-7373-P5c

MirGeneDB ID

Mdo-Mir-7373-P5c

Family name

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

Paralogues

Mdo-Mir-7373-P1a Mdo-Mir-7373-P1b Mdo-Mir-7373-P2 Mdo-Mir-7373-P3 Mdo-Mir-7373-P4a Mdo-Mir-7373-P4b Mdo-Mir-7373-P5a Mdo-Mir-7373-P5b Mdo-Mir-7373-P5d Mdo-Mir-7373-P5e Mdo-Mir-7373-P5f Mdo-Mir-7373-P5g Mdo-Mir-7373-P6 Mdo-Mir-7373-P7a Mdo-Mir-7373-P7b Mdo-Mir-7373-P8 Mdo-Mir-7373-P9a Mdo-Mir-7373-P9b Mdo-Mir-7373-P9c Mdo-Mir-7373-P9d Mdo-Mir-7373-P9e Mdo-Mir-7373-P10 Mdo-Mir-7373-P11 Mdo-Mir-7373-P12 Mdo-Mir-7373-P13 Mdo-Mir-7373-P14 Mdo-Mir-7373-P15 Mdo-Mir-7373-P16 Mdo-Mir-7373-P17 Mdo-Mir-7373-P18 Mdo-Mir-7373-P19 Mdo-Mir-7373-P20-v1 Mdo-Mir-7373-P21

Orthologues

Neu-Mir-7373 Sha-Mir-7373-o5

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 44677107-44677163 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7373-P5c)

Mir-7373-P1b X: 44665891-44665948 [-] UCSC Ensembl
Mir-7373-P1a X: 44666176-44666233 [-] UCSC Ensembl
Mir-7373-P2 X: 44667557-44667611 [-] UCSC Ensembl
Mir-7373-P3 X: 44670461-44670515 [-] UCSC Ensembl
Mir-7373-P4a X: 44673401-44673457 [-] UCSC Ensembl
Mir-7373-P5a X: 44673685-44673741 [-] UCSC Ensembl
Mir-7373-P5b X: 44673969-44674025 [-] UCSC Ensembl
Mir-7373-P6 X: 44674254-44674310 [-] UCSC Ensembl
Mir-7373-P7a X: 44674536-44674592 [-] UCSC Ensembl
Mir-7373-P7b X: 44674818-44674874 [-] UCSC Ensembl
Mir-7373-P8 X: 44675103-44675159 [-] UCSC Ensembl
Mir-7373-P9a X: 44675388-44675444 [-] UCSC Ensembl
Mir-7373-P9b X: 44675670-44675726 [-] UCSC Ensembl
Mir-7373-P10 X: 44675952-44676008 [-] UCSC Ensembl
Mir-7373-P9c X: 44676254-44676310 [-] UCSC Ensembl
Mir-7373-P11 X: 44676538-44676594 [-] UCSC Ensembl
Mir-7373-P12 X: 44676823-44676879 [-] UCSC Ensembl
Mir-7373-P5c X: 44677107-44677163 [-] UCSC Ensembl
Mir-7373-P5d X: 44677391-44677447 [-] UCSC Ensembl
Mir-7373-P5e X: 44677676-44677732 [-] UCSC Ensembl
Mir-7373-P9d X: 44677961-44678017 [-] UCSC Ensembl
Mir-7373-P4b X: 44678245-44678301 [-] UCSC Ensembl
Mir-7373-P5f X: 44678526-44678582 [-] UCSC Ensembl
Mir-7373-P5g X: 44678810-44678866 [-] UCSC Ensembl
Mir-7373-P13 X: 44679374-44679430 [-] UCSC Ensembl
Mir-7373-P14 X: 44679658-44679714 [-] UCSC Ensembl
Mir-7373-P9e X: 44679943-44679999 [-] UCSC Ensembl
Mir-7373-P15 X: 44680228-44680284 [-] UCSC Ensembl
Mir-7373-P16 X: 44682076-44682130 [-] UCSC Ensembl
Mir-7373-P17 X: 44686440-44686494 [-] UCSC Ensembl
Mir-7373-P18 X: 44687808-44687862 [-] UCSC Ensembl
Mir-7373-P19 X: 44688087-44688149 [-] UCSC Ensembl
Mir-7373-P20-v1 X: 44688608-44688663 [-] UCSC Ensembl
Mir-7373-P20-v2 X: 44688608-44688663 [-] UCSC Ensembl
Mir-7373-P21 X: 44689543-44689601 [-] UCSC Ensembl

Seed

AGCCCUU

Precursor
(pre-Mir +30nt flank)

GGGAAGGAGGACCCACUGAGAUGGAGGGGCUAGCCCUUACCCCCCCGACUAAUAGUAUUAAUCUGUUAGGGUGGGGUAAGGUACUGCUCCUUCAUCUCAUAGCACAUCACCCAUCAU

Get precursor sequence

Structure

        10          20        30        40          50       
GGGAAGGAGGACCCACU--             UAGC         -   -|  UAAUAGU 
                   GAGAUGGAGGGGC    CCUUACCCC CCC GAC       \
                   CUCUACUUCCUCG    GGAAUGGGG GGG UUG       A
UACUACCCACUACACGAUA             UCAU         U   A^  UCUAAUU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-7373-P5c_5p

mirBase accession

None

Sequence

0- UAGCCCUUACCCCCCCGACUAAU -23

Get sequence

Star sequence

Mdo-Mir-7373-P5c_3p*

mirBase accession

None

Sequence

35- UUAGGGUGGGGUAAGGUACUGC -57

Get sequence