MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-724-v2

Family name MIR-724 (all species)
Seed AAAGGGA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-724-v1 
Orthologues
Node of Origin (locus) Neopterygii
Node of Origin (family) Neopterygii
Genome context
(LepOcu1)
LG3: 32539805-32539863 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGGCCGUGACAUCCCAGCAGACUGGAUUUAAAGGGAAUUUGCGACUGUUGGUAAAACCAUUAGGACAGCCACACCUUCCUUUUAAGAUCUUGUCUGCUGCUCUAUCGUGCCCUGUUC
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Structure
        10          20        30         40        50        
CAGGGCCGUGACAUCCC--       U     -|        UU  CGA     GGUAAA 
                   AGCAGAC GGAUU UAAAGGGAA  UG   CUGUU      A
                   UCGUCUG UCUAG AUUUUCCUU  AC   GACAG      C
CUUGUCCCGUGCUAUCUCG       U     A^        CC  ACC     GAUUAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-724-v2_5p

mirBase accessionNone
Sequence
0- UAAAGGGAAUUUGCGACUGUUG -22
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Star sequence

Loc-Mir-724-v2_3p*

mirBase accessionNone
Sequence
36- ACAGCCACACCUUCCUUUUAAGA -59
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