Mir-190-P23

MirGeneDB ID

Llo-Mir-190-P23

Family name

MIR-190 (all species)

Species

Bootlace worm (Lineus longissimus)

MiRBase ID

Paralogues

Llo-Mir-190-P22

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

Lineidae

Node of Origin (family)

Bilateria

Genome context
(GCA_910592395.2_tnLinLong1)

OU343005.1: 14857902-14857959 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-190-P23)

Mir-190-P22 OU343005.1: 14856451-14856507 [-] Ensembl
Mir-190-P23 OU343005.1: 14857902-14857959 [-] Ensembl

Seed

GAUAUGU

Precursor
(pre-Mir +30nt flank)

AACCGUUGACAAUCCAUUCCCAUCCCUCCUAGAUAUGUUUGAUAUAAUUGGUGGUGAAUCGAAUCCACCAUAUAUCAGACAUAUAUUAGAGUGGUGGGGCAGACAACUAUCAAAAAAA

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Structure

        10          20        30        40        50         
AACCGUUGACAAUCCAU--|      C   CUAG              AU      UGAA 
                   UCCCAUC CUC    AUAUGUUUGAUAUA  UGGUGG    U
                   GGGGUGG GAG    UAUACAGACUAUAU  ACCACC    C
AAAAAAACUAUCAACAGAC^      U   AUUA              --      UAAG 
      110       100        90        80          70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

No	No	No	No	No	No

Mature sequence

Llo-Mir-190-P23_5p

mirBase accession

None

Sequence

0- AGAUAUGUUUGAUAUAAUUGGUGG -24

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Star sequence

Llo-Mir-190-P23_3p* (predicted)

mirBase accession

None

Sequence

36- ACCAUAUAUCAGACAUAUAUUA -58

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