| MirGeneDB ID | Laf-Mir-874 |
|---|
| Family name |
MIR-874 (all species) |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-874
Cfa-Mir-874
Cja-Mir-874
Cpo-Mir-874
Dno-Mir-874
Eca-Mir-874
Ete-Mir-874
Hsa-Mir-874
Mml-Mir-874
Mmr-Mir-874
Mmu-Mir-874
Ocu-Mir-874
Pab-Mir-874
Rno-Mir-874
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010028.1: 55052137-55052196 [-]
UCSC
Ensembl
|
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| Seed |
UGCCCUG |
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Precursor
(pre-Mir +30nt flank) |
CCUUCGGAUGAACUCUUGGUGUUAGCCCUGCGGCCCCACGCACCAGGGUAAGAGAGACUCUCGCUUCCUGCCCUGGCCCGAGGGACCGACUGGCUGGGCCUGCCUUCUGCCCAGCAUACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCUUCGGAUGAACUCUU---| G CUG C A CA A GAGAC
GGU UUAGCC CGG CCC CG CCAGGGUA GA U
CCG GGUCGG GCC GGG GC GGUCCCGU CU C
CCAUACGACCCGUCUUCCGU^ - UCA A A CC C UCGCU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Laf-Mir-874_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CGGCCCCACGCACCAGGGUAAGA -23
Get sequence
|
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| Mature sequence |
Laf-Mir-874_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CUGCCCUGGCCCGAGGGACCGAC -60
Get sequence
|
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