| MirGeneDB ID | Hvu-Novel-3-v1 |
|---|
| Family name |
HVU-NOVEL-3 (all species) |
|---|
| Seed |
AUGCUUU |
|---|
| Species |
Freshwater-polyp (Hydra vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hvu-Novel-3-v2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
H. vulgaris
|
|---|
| Node of Origin (family) |
H. vulgaris
|
|---|
Genome context
(Hm105_1.0) |
Sc4wPfr_1174: 5861-5911 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAAAAACUUAAAUUUGCGAAUAAUUUACCUGAUUAUAAUAAAAGCAUAAAUGAAAAGUUUAUGCUUUUGCUAUAUUCAGGUAAAUCAAACAAAAAGCAAUUUAGAAAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAAAAACUUAAAUUUGCGAAUA--| U A UGA
AUUUACCUGA UAUA UAAAAGCAUAAA \
UAAAUGGACU AUAU GUUUUCGUAUUU A
UAUAAAGAUUUAACGAAAAACAAAC^ U C GAA
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Hvu-Novel-3-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGAUUAUAAUAAAAGCAUAAA -21
Get sequence
|
|---|
| Mature sequence |
Hvu-Novel-3-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
30- UAUGCUUUUGCUAUAUUCAGG -51
Get sequence
|
|---|
