| MirGeneDB ID | Gmo-Mir-8160-P2 |
|---|
| Family name |
MIR-8160 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-8160b
|
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| Paralogues |
Gmo-Mir-8160-P1
|
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| Orthologues |
Mal-Mir-8160-P2
Tni-Mir-8160-P2
|
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| Node of Origin (locus) |
Acanthomorpha
|
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| Node of Origin (family) |
Acanthomorpha
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2210: 21491-21552 [-]
UCSC
Ensembl
|
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| Seed |
GAAUAAU |
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Precursor
(pre-Mir +30nt flank) |
UGUGGCUGCCCAGGCAGGCCCUUGGUGGUUAGAAUAAUGCCAGCAGUCGGCCGUGCUGCGAGCGCCUCUGGCCAGCGCUGGUGUUAUUGGGACCAACAUGGAAGCCGCACACAGGGAGCCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGUGGCUGCCCAGGCAGGC--| U G AG A C GUGCUGCG
CC UG UGGUU AAUAAUGCCAGC GU GGCC \
GG AC ACCAG UUAUUGUGGUCG CG CCGG A
CACCGAGGGACACACGCCGAA^ U A GG - A UCUCCGCG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-8160-P2_5p |
| mirBase accession | MIMAT0044411 |
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| Sequence |
0- AGAAUAAUGCCAGCAGUCGGCC -22
Get sequence
|
|---|
| Star sequence |
Gmo-Mir-8160-P2_3p* |
| mirBase accession | MIMAT0044412 |
|---|
| Sequence |
41- CCAGCGCUGGUGUUAUUGGGA -62
Get sequence
|
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