| MirGeneDB ID | Gmo-Mir-8160-P1 |
|---|
| Family name |
MIR-8160 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-8160a
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| Paralogues |
Gmo-Mir-8160-P2
|
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| Orthologues |
Mal-Mir-8160-P1
|
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| Node of Origin (locus) |
Acanthomorpha
|
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| Node of Origin (family) |
Acanthomorpha
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig356933: 258-315 [+]
UCSC
Ensembl
|
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| Seed |
GAAUAAU |
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Precursor
(pre-Mir +30nt flank) |
UCGAUGACAUCACCUGUUGCCGGGGCGGUCAGAAUAAUGCCAGCAGUCGGUCAGCGUGUAGCAGAGACCCACCCUGGUGUUAUUAGGACCGACCCGGGACCCAGACUACUGCAGGACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCGAUGACAUCACCUGUUG--| G AG CA C AGCGUG
CCGGG CGGUC AAUAAUGCCAG GU GGUC \
GGCCC GCCAG UUAUUGUGGUC CA CCAG U
CCAGGACGUCAUCAGACCCAG^ A GA C- C AGACGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-8160-P1_5p |
| mirBase accession | MIMAT0044357 |
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| Sequence |
0- AGAAUAAUGCCAGCAGUCGGUC -22
Get sequence
|
|---|
| Star sequence |
Gmo-Mir-8160-P1_3p* |
| mirBase accession | MIMAT0044358 |
|---|
| Sequence |
37- CCCACCCUGGUGUUAUUAGGA -58
Get sequence
|
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