| MirGeneDB ID | Mal-Mir-8160-P2 |
|---|
| Family name |
MIR-8160 (all species) |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-8160-P1
|
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| Orthologues |
Gmo-Mir-8160-P2
Tni-Mir-8160-P2
|
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| Node of Origin (locus) |
Acanthomorpha
|
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| Node of Origin (family) |
Acanthomorpha
|
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884731.1: 1702239-1702296 [+]
UCSC
Ensembl
|
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| Seed |
GAAUAAU |
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Precursor
(pre-Mir +30nt flank) |
UCUGGAUAUAUAUUGUGUUCUGUGGUGGUCAGAAUAAUGCCAGCAGUCGGCUGUGCUGUGUUUCAGGCCAGUGCUGGUGUUAUUGAGACCAACAUGGAUUCAAUGCACCAACUAUUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUGGAUAUAUAUUGUGU--| G AG GUC GUGCUG
UCUGUG UGGUC AAUAAUGCCAGCA GGCU \
AGGUAC ACCAG UUAUUGUGGUCGU CCGG U
UAUUAUCAACCACGUAACUU^ A AG GA- ACUUUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Mal-Mir-8160-P2_5p |
| mirBase accession | None |
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| Sequence |
0- AGAAUAAUGCCAGCAGUCGGCU -22
Get sequence
|
|---|
| Star sequence |
Mal-Mir-8160-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CCAGUGCUGGUGUUAUUGAGA -58
Get sequence
|
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