| MirGeneDB ID | Esc-Novel-4 |
|---|---|
| Family name | ESC-NOVEL-4 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | Esc-Novel-4-v1 |
| Orthologues | |
| Node of Origin (locus) | E. scolopes |
| Node of Origin (family) | E. scolopes |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044490.1: 74234102-74234166 [-] Ensembl |
| Clustered miRNAs (< 50kb from Novel-4-v2) |
Novel-4-v2
CM044490.1: 74234102-74234166 [-]
Ensembl
Novel-4-v1 CM044490.1: 74234103-74234165 [-] Ensembl |
| Variant | Esc-Novel-4-v2 |
| Seed | GGACACA |
| Precursor (pre-Mir +30nt flank) |
UCAGGCGAUAUGGCAUUGGUGAUGUACCCAACCGUUCAUAUCUGAGUCCAGUUGGAACACAGGUCUGAAGAACUGGACACACAAAUGAACGGUUGGGUGGAUAUAUCCAAAAUCCUGGCAGCCGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCAGGCGAUAUGGCAUU- -| G AUC A UGGAACACA GGUG AU UACCCAACCGUUCAU UG GUCCAGU \ CUAU UA GUGGGUUGGCAAGUA AC CAGGUCA G CGCCGACGGUCCUAAAAC A^ G AAC A AGAAGUCUG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14) |
| Star sequence | Esc-Novel-4-v2_5p* |
| mirBase accession | None |
| Sequence |
0- ACCGUUCAUAUCUGAGUCCAGU -22
Get sequence
|
| Mature sequence | Esc-Novel-4-v2_3p |
| mirBase accession | None |
| Sequence |
43- UGGACACACAAAUGAACGGUUG -65
Get sequence
|
| Variant | Esc-Novel-4-v1 |
| Seed | UGGACAC |
| Precursor (pre-Mir +30nt flank) |
CAGGCGAUAUGGCAUUGGUGAUGUACCCAACCGUUCAUAUCUGAGUCCAGUUGGAACACAGGUCUGAAGAACUGGACACACAAAUGAACGGUUGGGUGGAUAUAUCCAAAAUCCUGGCAGCCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGGCGAUAUGGCAUUGGUG--| G AUC A GGAACACA AU UACCCAACCGUUCAU UG GUCCAGUU \ UA GUGGGUUGGCAAGUA AC CAGGUCAA G GCCGACGGUCCUAAAACCUAUA^ G AAC A GAAGUCUG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Esc-Novel-4-v1_5p* |
| mirBase accession | None |
| Sequence |
0- CCGUUCAUAUCUGAGUCCAGUU -22
Get sequence
|
| Mature sequence | Esc-Novel-4-v1_3p |
| mirBase accession | None |
| Sequence |
41- CUGGACACACAAAUGAACGGUU -63
Get sequence
|
