| MirGeneDB ID | Esc-Novel-29-v1 |
|---|
| Family name |
COL-NOVEL-29 (all species) |
|---|
| Seed |
UUCCCGC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-29-v2
|
|---|
| Orthologues |
Obi-Novel-29-v1
Ovu-Novel-29-v1
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-29-v1_pre_SRIE01001521.1:1114947-1115207: 101-161 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGUUUGACGAAAUCAAAUAGCUUGGCAGGGAGGCUUUUUCGGAAGGGGAAAAAUUUGAAAGUUUCUUUUUUCCCGCCGAAAAAGCCUGCCGGCCGGGGCUACUCUACCACCUUCUUCAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUGUUUGACGAAAUCAAA- -| A G AA AUUUGA
UAG CUUGGC GG AGGCUUUUUCGG GGGGAAAA A
AUC GGGCCG CC UCCGAAAAAGCC CCCUUUUU A
CAACUUCUUCCACCAUCUC G^ G G G- UCUUUG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-29-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAGGCUUUUUCGGAAGGGGAAAA -23
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-29-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUUCCCGCCGAAAAAGCCUGCC -61
Get sequence
|
|---|
