MirGeneDB ID | Ovu-Novel-29-v1 |
Family name |
COL-NOVEL-29 (all species) |
Seed |
UUCCCGC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Novel-29-v2
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Orthologues |
Esc-Novel-29-v1
Obi-Novel-29-v1
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01032018.1: 349846-349906 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGGUACUGAUGACAAUGAUGGCUUGGCAGACAGACCUUUUCAGAAGGGGAAAAAUUAGGUUUCUCCAUUUUUCCCGCUGAAAAAGCCUUCCUGCCAAGACUCCUACCCAGGUUGUCAACGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGUACUGAUGACAAUGAU- -| AC ACC AA AUUAGG
GG CUUGGCAG AG UUUUCAG GGGGAAAA U
UC GAACCGUC UC AAAAGUC CCCUUUUU U
AGCAACUGUUGGACCCAUCC A^ CU CGA G- ACCUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | No |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-29-v1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAGACCUUUUCAGAAGGGGAAAA -23
Get sequence
|
Mature sequence |
Ovu-Novel-29-v1_3p |
mirBase accession | None |
Sequence |
39- UUUCCCGCUGAAAAAGCCUUCC -61
Get sequence
|