MirGeneDB ID | Esc-Novel-29-v2 |
Family name |
COL-NOVEL-29 (all species) |
Seed |
UUUCCCG |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-29-v1
|
Orthologues |
Obi-Novel-29-v2
Ovu-Novel-29-v2
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-29-v1_pre_SRIE01001521.1:1114947-1115207: 102-160 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUUUGACGAAAUCAAAUAGCUUGGCAGGGAGGCUUUUUCGGAAGGGGAAAAAUUUGAAAGUUUCUUUUUUCCCGCCGAAAAAGCCUGCCGGCCGGGGCUACUCUACCACCUUCUUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUUUGACGAAAUCAAA- -| A G AA UUUGA
UAG CUUGGC GG AGGCUUUUUCGG GGGGAAAAA A
AUC GGGCCG CC UCCGAAAAAGCC CCCUUUUUU A
AACUUCUUCCACCAUCUC G^ G G G- CUUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-29-v2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGCUUUUUCGGAAGGGGAAAAA -23
Get sequence
|
Mature sequence |
Esc-Novel-29-v2_3p |
mirBase accession | None |
Sequence |
37- UUUUCCCGCCGAAAAAGCCUGC -59
Get sequence
|