MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-29-v2

Family name COL-NOVEL-29 (all species)
Seed UUUCCCG
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Novel-29-v1 
Orthologues Obi-Novel-29-v2  Ovu-Novel-29-v2 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-29-v1_pre_SRIE01001521.1:1114947-1115207: 102-160 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUGACGAAAUCAAAUAGCUUGGCAGGGAGGCUUUUUCGGAAGGGGAAAAAUUUGAAAGUUUCUUUUUUCCCGCCGAAAAAGCCUGCCGGCCGGGGCUACUCUACCACCUUCUUCAA
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Structure
        10         20         30        40        50         
UGUUUGACGAAAUCAAA-   -|     A  G            AA         UUUGA 
                  UAG CUUGGC GG AGGCUUUUUCGG  GGGGAAAAA     A
                  AUC GGGCCG CC UCCGAAAAAGCC  CCCUUUUUU     A
AACUUCUUCCACCAUCUC   G^     G  G            G-         CUUUG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Star sequence

Esc-Novel-29-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGCUUUUUCGGAAGGGGAAAAA -23
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Mature sequence

Esc-Novel-29-v2_3p

mirBase accessionNone
Sequence
37- UUUUCCCGCCGAAAAAGCCUGC -59
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