| MirGeneDB ID | Esc-Mir-12521 |
|---|---|
| Family name | MIR-12521 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | Esc-Mir-12521-v1 |
| Orthologues | |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044504.1: 9722094-9722155 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12521-v3) |
Mir-12521-v1
CM044504.1: 9722094-9722155 [-]
Ensembl
Mir-12521-v2 CM044504.1: 9722094-9722155 [-] Ensembl Mir-12521-v3 CM044504.1: 9722094-9722155 [-] Ensembl |
| Variant | Esc-Mir-12521-v3 |
| Seed | AUUUAGU |
| Precursor (pre-Mir +30nt flank) |
AAGUCAGAAGGAAGCUUGUUUUCGUUCGCUAGCUGGUUAUGUGAACUAAGAUUCAUUUCUUUAUCAAAUAUUUAGUGCACAUAACUGGCUGACGAACAAAGCGCUAUUCGUCCAAUCACCGCGet precursor sequence |
| Structure | 10 20 30 40 50 AAGUCAGAAGGAAGCUU---| C C UG A - CAUUUC GUUUU GUUCG UAGC GUUAUGUG ACUAAG AUU \ CGAAA CAAGC GUCG CAAUACAC UGAUUU UAA U CGCCACUAACCUGCUUAUCG^ - A GU G A ACUAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12521-v3_5p* |
| mirBase accession | None |
| Sequence |
0- AGCUGGUUAUGUGAACUAAGAUUC -24
Get sequence
|
| Mature sequence | Esc-Mir-12521-v3_3p |
| mirBase accession | None |
| Sequence |
38- UAUUUAGUGCACAUAACUGGCUGA -62
Get sequence
|
| Variant | Esc-Mir-12521-v1 |
| Seed | UUAGUGC |
| Precursor (pre-Mir +30nt flank) |
AAGUCAGAAGGAAGCUUGUUUUCGUUCGCUAGCUGGUUAUGUGAACUAAGAUUCAUUUCUUUAUCAAAUAUUUAGUGCACAUAACUGGCUGACGAACAAAGCGCUAUUCGUCCAAUCACCGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGUCAGAAGGAAGCUU---| C C UG A AUUCAUUUC GUUUU GUUCG UAGC GUUAUGUG ACUAAG U CGAAA CAAGC GUCG CAAUACAC UGAUUU U CGCCACUAACCUGCUUAUCG^ - A GU G AUAAACUAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12521-v1_5p* |
| mirBase accession | None |
| Sequence |
0- AGCUGGUUAUGUGAACUAAGAU -22
Get sequence
|
| Mature sequence | Esc-Mir-12521-v1_3p |
| mirBase accession | None |
| Sequence |
40- UUUAGUGCACAUAACUGGCUGA -62
Get sequence
|
| Variant | Esc-Mir-12521-v2 |
| Seed | UUUAGUG |
| Precursor (pre-Mir +30nt flank) |
AAGUCAGAAGGAAGCUUGUUUUCGUUCGCUAGCUGGUUAUGUGAACUAAGAUUCAUUUCUUUAUCAAAUAUUUAGUGCACAUAACUGGCUGACGAACAAAGCGCUAUUCGUCCAAUCACCGCGet precursor sequence |
| Structure | 10 20 30 40 50 AAGUCAGAAGGAAGCUU---| C C UG A - CAUUUC GUUUU GUUCG UAGC GUUAUGUG ACUAAG AUU \ CGAAA CAAGC GUCG CAAUACAC UGAUUU UAA U CGCCACUAACCUGCUUAUCG^ - A GU G A ACUAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12521-v2_5p* |
| mirBase accession | None |
| Sequence |
0- AGCUGGUUAUGUGAACUAAGAUU -23
Get sequence
|
| Mature sequence | Esc-Mir-12521-v2_3p |
| mirBase accession | None |
| Sequence |
39- AUUUAGUGCACAUAACUGGCUGA -62
Get sequence
|
