| MirGeneDB ID | Esc-Mir-12514 |
|---|---|
| Family name | MIR-12514 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | Esc-Mir-12514-v1 |
| Orthologues | Obi-Mir-12514 Ovu-Mir-12514 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044524.1: 57511940-57511997 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12514-v2) |
Mir-12514-v1
CM044524.1: 57511940-57511997 [-]
Ensembl
Mir-12514-v2 CM044524.1: 57511940-57511997 [-] Ensembl |
| Variant | Esc-Mir-12514-v2 |
| Seed | AAGGGUU |
| Precursor (pre-Mir +30nt flank) |
UGACGUCAUCACUUGAGGGUUUUGUUACUGAGCAAGACAGACUUACUUUUGUGACUUUUAGCACCAAAGGGUUUCUGUGUUGUUCUCAGUUGCGGCUCUCUUCUCAUCUCAACAAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 UGACGUCAUCACUUGAG-- UU U --| G CUUA UGACUU GG UUGU ACUGAG CAA ACAGA CUUUUG \ UC GGCG UGACUC GUU UGUCU GGAAAC U AAAAACAACUCUACUCUUC UC U UU^ G UUG- CACGAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12514-v2_5p* |
| mirBase accession | None |
| Sequence |
0- AGCAAGACAGACUUACUUUUG -21
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|
| Mature sequence | Esc-Mir-12514-v2_3p |
| mirBase accession | None |
| Sequence |
35- AAAGGGUUUCUGUGUUGUUCUCA -58
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|
| Variant | Esc-Mir-12514-v1 |
| Seed | AAAGGGU |
| Precursor (pre-Mir +30nt flank) |
UGACGUCAUCACUUGAGGGUUUUGUUACUGAGCAAGACAGACUUACUUUUGUGACUUUUAGCACCAAAGGGUUUCUGUGUUGUUCUCAGUUGCGGCUCUCUUCUCAUCUCAACAAAAAGet precursor sequence |
| Structure | 10 20 30 40 50 UGACGUCAUCACUUGAG-- UU U --| G CUUA UGACUU GG UUGU ACUGAG CAA ACAGA CUUUUG \ UC GGCG UGACUC GUU UGUCU GGAAAC U AAAAACAACUCUACUCUUC UC U UU^ G UUG- CACGAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12514-v1_5p* |
| mirBase accession | None |
| Sequence |
0- AGCAAGACAGACUUACUUUUGU -22
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|
| Mature sequence | Esc-Mir-12514-v1_3p |
| mirBase accession | None |
| Sequence |
34- CAAAGGGUUUCUGUGUUGUUCUCA -58
Get sequence
|
