| MirGeneDB ID | Esc-Mir-12506-P1 |
|---|---|
| Family name | MIR-12506 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | Esc-Mir-12506-P1-v1 Esc-Mir-12506-P2-v1 |
| Orthologues | Npo-Mir-12506 |
| Node of Origin (locus) | E. scolopes |
| Node of Origin (family) | Cephalopoda |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044502.1: 98531718-98531781 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12506-P1-v2) |
Mir-12506-P1-v1
CM044502.1: 98531718-98531781 [+]
Ensembl
Mir-12506-P1-v2 CM044502.1: 98531718-98531781 [+] Ensembl |
| Variant | Esc-Mir-12506-P1-v2 |
| Seed | GGAUCUU |
| Precursor (pre-Mir +30nt flank) |
CCGCAGCCGGAACCGCAGUCAGUUGUGUGCAGUUAGUGGUAAAGCCCUUGCAUUCGACCAGUCUAUCUAUGCAGGAUCUUUAGUCACUAGCUGCUCACCUUUGACACCACAGCAGACACACGCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCGCAGCCGGAACCGCA-- UU U -| CC AUUCGACCA GUCAG GUG GCAGUUAGUGG UAAAG CUUGC \ CAGUU CAC CGUCGAUCACU AUUUC GGACG G GCGCACACAGACGACACCA UC U G^ UA UAUCUAUCU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12506-P1-v2_5p* |
| mirBase accession | None |
| Sequence |
0- AGUUAGUGGUAAAGCCCUUGC -21
Get sequence
|
| Mature sequence | Esc-Mir-12506-P1-v2_3p |
| mirBase accession | None |
| Sequence |
42- AGGAUCUUUAGUCACUAGCUGC -64
Get sequence
|
| Variant | Esc-Mir-12506-P1-v1 |
| Seed | AGGAUCU |
| Precursor (pre-Mir +30nt flank) |
CCGCAGCCGGAACCGCAGUCAGUUGUGUGCAGUUAGUGGUAAAGCCCUUGCAUUCGACCAGUCUAUCUAUGCAGGAUCUUUAGUCACUAGCUGCUCACCUUUGACACCACAGCAGACACACGCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCGCAGCCGGAACCGCA-- UU U -| CC UUCGACCA GUCAG GUG GCAGUUAGUGG UAAAG CUUGCA \ CAGUU CAC CGUCGAUCACU AUUUC GGACGU G GCGCACACAGACGACACCA UC U G^ UA AUCUAUCU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12506-P1-v1_5p* |
| mirBase accession | None |
| Sequence |
0- AGUUAGUGGUAAAGCCCUUGCA -22
Get sequence
|
| Mature sequence | Esc-Mir-12506-P1-v1_3p |
| mirBase accession | None |
| Sequence |
41- CAGGAUCUUUAGUCACUAGCUGC -64
Get sequence
|
