MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-2000-P1

Family name MIR-2000 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-2000-P2 
Orthologues Cte-Mir-2000  Snu-Mir-2000 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)		 Efet.01.58205: 3094-3153 [-]
Clustered miRNAs
(< 50kb from Mir-2000-P1)		 Mir-2000-P1 Efet.01.58205: 3094-3153 [-]
Mir-1998-P1 Efet.01.58205: 4197-4257 [-]
Seed AAGUCUU
Precursor
(pre-Mir +30nt flank)		 
GGCGCUUCAAAAAUUCAGACAAUUUCCUGGCUGAAAGUAUCGCUAGGCUUUAAACUGACCUUCAAAUUAAAGUCUUCUAUACUUUUAGUCGGGUGACAAAACUGAACUUCACCGGAUAGU
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Structure
        10        20          30        40        50          
GGCGCUUCAAAAAUUCAGACAAUUU--|              CGCU         ACUGAC 
                           CCUGGCUGAAAGUAU    AGGCUUUAA      \
                           GGGCUGAUUUUCAUA    UCUGAAAUU      C
UGAUAGGCCACUUCAAGUCAAAACAGU^              UCU-         AAACUU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Efe-Mir-2000-P1_5p*
mirBase accessionNone
Sequence 
0- CUGAAAGUAUCGCUAGGCUUUAA -23
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Mature sequence

Efe-Mir-2000-P1_3p
mirBase accessionNone
Sequence 
38- AAAGUCUUCUAUACUUUUAGUC -60
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